Co-expression analysis

Gene ID Ta.7502.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At2g04270: RNEE/G (RNASE E/G-LIKE) (HF=4e-3)
Module size 6 genes
NF 0.49
%ile 75.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5779.20.96Ta.7502.1.S1_atBT008946.1--4e-3At2g04270RNEE/G (RNASE E/G-LIKE)O.I.H.G.S.X.
0.5979.80.95Ta.9700.1.S1_x_atCK154348--5e-6At5g49030OVA2 (ovule abortion 2)O.I.H.G.S.X.
0.5576.80.95Ta.9700.1.S1_atCK154348--5e-6At5g49030OVA2 (ovule abortion 2)O.I.H.G.S.X.
0.4362.20.95TaAffx.120467.1.A1_atBJ217609--7e-1At2g11405unknown proteinO.I.H.G.S.X.
0.4362.20.95Ta.17034.1.S1_s_atCA616897--3e+0At2g28870unknown proteinO.I.H.G.S.X.
0.2735.60.95Ta.7493.1.S1_atCK205703--2e+0At3g53050galactose-binding lectin family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.898.7GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.998.0GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.596.9GSM139914Anther pre-meiosis rep2GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
4.596.9GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.496.8GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.296.6GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.896.0GSM139923Anther telophaseI-telophaseII rep2GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
3.294.8GSM138208genotype H23 developing seed at 5 days after anthesis, biological rep1GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
3.094.3GSM324488Si- B+ rep2GSE12936Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildewLink to GEO
3.094.3GSM139929Anther immature pollen rep2GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1614432_at, orthologous to the query gene, Ta.7502.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.81614432_atAt2g04270hypothetical protein LOC100256290-5e-60At2g04270RNEE/G (RNASE E/G-LIKE)O.I.H.G.S.X.
0.5375.21620553_atAt2g04270hypothetical protein LOC100265994-4e-28At3g58140phenylalanyl-tRNA synthetase class IIc family proteinO.I.H.G.S.X.
0.5173.21621271_atAt2g04270hypothetical protein LOC100244294-2e+0At5g28931unknown proteinO.I.H.G.S.X.
0.5173.21616415_atAt2g04270hypothetical protein LOC100254604-3e-4At5g49030OVA2 (ovule abortion 2)O.I.H.G.S.X.
0.4767.71611582_s_atAt2g04270hypothetical protein LOC100245393-5e-5At1g44575NPQ4 (NONPHOTOCHEMICAL QUENCHING)O.I.H.G.S.X.
0.4666.51606617_atAt2g04270hypothetical protein LOC100244206-1e+0At1g16730unknown proteinO.I.H.G.S.X.
0.4564.61616222_atAt2g04270--1e-18At3g47650bundle-sheath defective protein 2 family / bsd2 familyO.I.H.G.S.X.
0.4564.61622495_atAt2g04270hypothetical protein LOC100248841-4e-26At1g74970RPS9 (RIBOSOMAL PROTEIN S9)O.I.H.G.S.X.
0.4464.11614745_atAt2g04270hypothetical protein LOC100252143-2e-8At2g24090ribosomal protein L35 family proteinO.I.H.G.S.X.
0.4260.11620768_atAt2g04270hypothetical protein LOC100259668-1e-19At1g04420aldo/keto reductase family proteinO.I.H.G.S.X.
0.4158.71620744_atAt2g04270hypothetical protein LOC100248911-2e-6At1g20340DRT112O.I.H.G.S.X.
0.4158.71611580_atAt2g04270hypothetical protein LOC100259528-1e-20At5g51010rubredoxin family proteinO.I.H.G.S.X.
0.4057.71617646_atAt2g04270hypothetical protein LOC100261565-4e-26At5g16400ATF2O.I.H.G.S.X.
0.4057.71617326_atAt2g04270hypothetical protein LOC100265493-1e-25At5g12130PDE149 (PIGMENT DEFECTIVE 149)O.I.H.G.S.X.
0.3954.91619396_atAt2g04270hypothetical protein LOC100265576-1e-10At5g44600unknown proteinO.I.H.G.S.X.
0.3954.91622193_atAt2g04270hypothetical protein LOC100265325-2e-35At5g30510RPS1 (RIBOSOMAL PROTEIN S1)O.I.H.G.S.X.
0.3954.91617122_s_atAt2g04270hypothetical protein LOC100258002-8e-11At2g38140PSRP4 (PLASTID-SPECIFIC RIBOSOMAL PROTEIN 4)O.I.H.G.S.X.
0.3853.61607774_atAt2g04270hypothetical protein LOC100262553-7e+0At3g14080small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putativeO.I.H.G.S.X.
0.3751.71616457_atAt2g04270hypothetical protein LOC100263581-2e+0At5g12990CLE40 (CLAVATA3/ESR-RELATED 40)O.I.H.G.S.X.
0.3650.71610385_atAt2g04270hypothetical protein LOC100253144-4e+0At5g48175unknown proteinO.I.H.G.S.X.
0.3650.71613494_s_atAt2g04270probable oxygen-evolving enhancer protein 2-2e-22At1g06680PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1)O.I.H.G.S.X.
0.3548.51611733_s_atAt2g04270hypothetical protein LOC100240928-2e-12At1g03130PSAD-2 (photosystem I subunit D-2)O.I.H.G.S.X.
0.3548.51619816_atAt2g04270hypothetical protein LOC100250681-2e-11At1g75350emb2184 (embryo defective 2184)O.I.H.G.S.X.
0.3548.51616667_a_atAt2g04270similar to ribosomal protein L29 family protein /// hypothetical protein LOC100259766-7e-5At5g65220ribosomal protein L29 family proteinO.I.H.G.S.X.
0.3345.71621408_atAt2g04270hypothetical protein LOC100244724-5e+0Atmg01370-O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Zea_mays



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