Co-expression analysis

Gene ID Ta.7502.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At2g04270: RNEE/G (RNASE E/G-LIKE) (HF=4e-3)
Module size 6 genes
NF 0.49
%ile 75.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5779.20.96Ta.7502.1.S1_atBT008946.1--4e-3At2g04270RNEE/G (RNASE E/G-LIKE)O.I.H.G.S.X.
0.5979.80.95Ta.9700.1.S1_x_atCK154348--5e-6At5g49030OVA2 (ovule abortion 2)O.I.H.G.S.X.
0.5576.80.95Ta.9700.1.S1_atCK154348--5e-6At5g49030OVA2 (ovule abortion 2)O.I.H.G.S.X.
0.4362.20.95TaAffx.120467.1.A1_atBJ217609--7e-1At2g11405unknown proteinO.I.H.G.S.X.
0.4362.20.95Ta.17034.1.S1_s_atCA616897--3e+0At2g28870unknown proteinO.I.H.G.S.X.
0.2735.60.95Ta.7493.1.S1_atCK205703--2e+0At3g53050galactose-binding lectin family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.898.7GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.998.0GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.596.9GSM139914Anther pre-meiosis rep2GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
4.596.9GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.496.8GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.296.6GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.896.0GSM139923Anther telophaseI-telophaseII rep2GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
3.294.8GSM138208genotype H23 developing seed at 5 days after anthesis, biological rep1GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
3.094.3GSM324488Si- B+ rep2GSE12936Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildewLink to GEO
3.094.3GSM139929Anther immature pollen rep2GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.211940.1.S1_at, orthologous to the query gene, Ta.7502.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8296.3PtpAffx.211940.1.S1_atAt2g04270hypothetical protein-2e-113At2g04270RNEE/G (RNASE E/G-LIKE)O.I.H.G.S.X.
0.4067.0PtpAffx.201555.1.S1_atAt2g04270hypothetical protein-2e-26At5g42310pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.3357.5Ptp.3903.1.S1_atAt2g04270hypothetical protein-9e-5At1g31410putrescine-binding periplasmic protein-relatedO.I.H.G.S.X.
0.2340.5PtpAffx.215359.1.S1_atAt2g04270hypothetical protein-1e-17At1g17850-O.I.H.G.S.X.
0.2238.3PtpAffx.204068.1.S1_atAt2g04270hypothetical protein-7e-54At3g02450cell division protein ftsH, putativeO.I.H.G.S.X.
0.2034.6Ptp.6062.1.S1_atAt2g04270hypothetical protein-2e-19At3g06510SFR2 (SENSITIVE TO FREEZING 2)O.I.H.G.S.X.
0.1932.7PtpAffx.22554.1.S1_atAt2g04270hypothetical protein-6e-1At1g30190unknown proteinO.I.H.G.S.X.
0.1423.5Ptp.6876.1.A1_a_atAt2g04270hypothetical protein-3e-13At4g33480unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Vitis_vinifera
Zea_mays



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