CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.7493.1.S1_at

Gene name
Homology with Arabidopsis Similar to At3g53050: galactose-binding lectin family protein (HF=2e+0)

Module size 6 genes

NF 0.60

%ile 86.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 88.0 0.96 Ta.7493.1.S1_at CK205703 - - 2e+0 At3g53050 galactose-binding lectin family protein O.I. H.G. S.X.
0.63 83.1 0.95 Ta.8051.1.S1_at CK168230 - - 3e+0 At5g23310 FSD3 (FE SUPEROXIDE DISMUTASE 3) O.I. H.G. S.X.
0.60 81.0 0.96 TaAffx.112322.1.S1_at CA706806 - - 4e+0 At4g32208 - O.I. H.G. S.X.
0.55 76.8 0.97 TaAffx.53324.1.S1_x_at CA693604 - - 9e+0 At4g09070 - O.I. H.G. S.X.
0.47 67.9 0.96 Ta.12083.1.A1_at CD885615 - - 1e+0 At5g17470 calmodulin-related protein, putative O.I. H.G. S.X.
0.36 51.9 0.97 Ta.25402.1.S1_at CK160504 - - 4e-42 At1g11430 plastid developmental protein DAG, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.0 99.1 GSM250899 TcLr34_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
9.7 99.1 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.5 98.6 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.3 98.6 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.4 98.2 GSM250896 Tc_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.4 98.2 GSM250897 TcLr1_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.9 97.3 GSM298090 Leaf tissue of Solstice at 5 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
4.0 96.3 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
3.5 95.4 GSM324484 Si- B- rep1 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.5 95.4 GSM324492 Si+ B- rep3 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew

Inter-species module comparison

A co-expression module including the maize gene, Zm.5087.1.A1_at, orthologous to the query gene, Ta.7493.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.86 96.3 Zm.5087.1.A1_at At3g53050 - - 3e-1 At5g37478 - O.I. H.G. S.X.
0.69 86.5 Zm.13984.1.A1_at At3g53050 phytosulfokine peptide precursor1 - 1e+0 At5g27860 unknown protein O.I. H.G. S.X.
0.64 81.7 ZmAffx.592.1.A1_at At3g53050 - - 1e+1 At3g12300 unknown protein O.I. H.G. S.X.
0.62 79.8 Zm.3157.2.A1_at At3g53050 ubiquitin carboxyl-terminal hydrolase 6 - 5e-15 At1g51710 UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) O.I. H.G. S.X.
0.56 74.4 Zm.10487.1.S1_at At3g53050 desiccation-associated protein - 1e-1 At1g12665 - O.I. H.G. S.X.
0.53 69.1 ZmAffx.828.1.S1_at At3g53050 - - 3e+0 At2g32890 RALFL17 (RALF-LIKE 17) O.I. H.G. S.X.
0.51 66.4 ZmAffx.190.1.A1_at At3g53050 - - 5e-2 At3g56910 PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5) O.I. H.G. S.X.
0.49 61.9 ZmAffx.1036.1.A1_at At3g53050 - - 1e-1 At2g43795 unknown protein O.I. H.G. S.X.
0.48 61.3 ZmAffx.1183.1.A1_at At3g53050 - - 1e+0 At1g19920 APS2 O.I. H.G. S.X.
0.48 61.3 ZmAffx.543.1.S1_at At3g53050 - - 3e+0 At4g03510 RMA1 O.I. H.G. S.X.
0.45 56.4 ZmAffx.855.1.S1_at At3g53050 - - 1e+1 At5g23035 - O.I. H.G. S.X.
0.32 33.4 Zm.2463.2.S1_at At3g53050 hypothetical protein LOC100193981 - 3e+0 At2g14890 AGP9 (ARABINOGALACTAN PROTEIN 9) O.I. H.G. S.X.
0.25 21.3 Zm.12405.1.A1_at At3g53050 alpha/beta hydrolase fold - 2e+0 At1g64340 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera

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