Co-expression analysis

Gene ID	Ta.7493.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g53050: galactose-binding lectin family protein (HF=2e+0)
Module size	6 genes
NF	0.60
%ile	86.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	88.0	0.96	Ta.7493.1.S1_at	CK205703	-	-	2e+0	At3g53050	galactose-binding lectin family protein	O.I.	H.G.	S.X.	Please select
0.63	83.1	0.95	Ta.8051.1.S1_at	CK168230	-	-	3e+0	At5g23310	FSD3 (FE SUPEROXIDE DISMUTASE 3)	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.96	TaAffx.112322.1.S1_at	CA706806	-	-	4e+0	At4g32208	-	O.I.	H.G.	S.X.	Please select
0.55	76.8	0.97	TaAffx.53324.1.S1_x_at	CA693604	-	-	9e+0	At4g09070	-	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.96	Ta.12083.1.A1_at	CD885615	-	-	1e+0	At5g17470	calmodulin-related protein, putative	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.97	Ta.25402.1.S1_at	CK160504	-	-	4e-42	At1g11430	plastid developmental protein DAG, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.0	99.1	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
9.7	99.1	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.5	98.6	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.3	98.6	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.4	98.2	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.4	98.2	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.9	97.3	GSM298090	Leaf tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.0	96.3	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.5	95.4	GSM324484	Si- B- rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.5	95.4	GSM324492	Si+ B- rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew

Inter-species module comparison

A co-expression module including the grape gene, 1620153_at, orthologous to the query gene, Ta.7493.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	1620153_at	At3g53050	-	-	7e-2	At4g22513	-	O.I.	H.G.	S.X.	Please select
0.07	7.8	1621891_at	At3g53050	hypothetical protein LOC100242841	-	8e-2	At5g41520	40S ribosomal protein S10 (RPS10B)	O.I.	H.G.	S.X.	Please select
0.03	4.2	1607829_at	At3g53050	-	-	2e-18	At3g14080	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	O.I.	H.G.	S.X.	Please select
0.03	4.2	1619188_at	At3g53050	-	-	2e+0	At1g48940	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.01	2.1	1610794_at	At3g53050	hypothetical protein LOC100254003	-	2e-46	At1g20330	SMT2 (STEROL METHYLTRANSFERASE 2)	O.I.	H.G.	S.X.	Please select
0.01	2.1	1607928_at	At3g53050	-	-	5e-3	At4g08230	glycine-rich protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

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