CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.7493.1.S1_at

Gene name
Homology with Arabidopsis Similar to At3g53050: galactose-binding lectin family protein (HF=2e+0)

Module size 6 genes

NF 0.60

%ile 86.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 88.0 0.96 Ta.7493.1.S1_at CK205703 - - 2e+0 At3g53050 galactose-binding lectin family protein O.I. H.G. S.X.
0.63 83.1 0.95 Ta.8051.1.S1_at CK168230 - - 3e+0 At5g23310 FSD3 (FE SUPEROXIDE DISMUTASE 3) O.I. H.G. S.X.
0.60 81.0 0.96 TaAffx.112322.1.S1_at CA706806 - - 4e+0 At4g32208 - O.I. H.G. S.X.
0.55 76.8 0.97 TaAffx.53324.1.S1_x_at CA693604 - - 9e+0 At4g09070 - O.I. H.G. S.X.
0.47 67.9 0.96 Ta.12083.1.A1_at CD885615 - - 1e+0 At5g17470 calmodulin-related protein, putative O.I. H.G. S.X.
0.36 51.9 0.97 Ta.25402.1.S1_at CK160504 - - 4e-42 At1g11430 plastid developmental protein DAG, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.0 99.1 GSM250899 TcLr34_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
9.7 99.1 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.5 98.6 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.3 98.6 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.4 98.2 GSM250896 Tc_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.4 98.2 GSM250897 TcLr1_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.9 97.3 GSM298090 Leaf tissue of Solstice at 5 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
4.0 96.3 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
3.5 95.4 GSM324484 Si- B- rep1 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.5 95.4 GSM324492 Si+ B- rep3 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew

Inter-species module comparison

A co-expression module including the rice gene, Os07g0168000, orthologous to the query gene, Ta.7493.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 Os07g0168000 At3g53050 - Polyribonucleotide phophorylase (Fragment) 1e-25 At3g03710 RIF10 (resistant to inhibition with FSM 10) O.I. H.G. S.X.
0.50 68.0 Os01g0889800 At3g53050 - Rhodanese-like domain containing protein 2e-1 At3g25480 rhodanese-like domain-containing protein O.I. H.G. S.X.
0.44 58.1 Os03g0117800 At3g53050 - Fructosamine kinase family protein 1e-5 At3g61080 fructosamine kinase family protein O.I. H.G. S.X.
0.36 44.0 Os05g0566300 At3g53050 - RimM protein domain containing protein 7e-3 At5g46420 16S rRNA processing protein RimM family O.I. H.G. S.X.
0.33 38.8 Os05g0519600 At3g53050 - 4-methyl-5(B-hydroxyethyl)-thiazol monophosphatebiosynthesis enzyme 7e-2 At5g48953 LCR86 (Low-molecular-weight cysteine-rich 86) O.I. H.G. S.X.
0.30 32.7 Os03g0799700 At3g53050 - GTP1/OBG subdomain containing protein 6e-2 At2g30420 ETC2 O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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