Co-expression analysis

Gene ID Ta.7346.2.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g56910: PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5) (HF=5e-2)
Module size 25 genes
NF 0.26
%ile 42.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7991.30.64Ta.7346.2.S1_atBJ313080--5e-2At3g56910PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5)O.I.H.G.S.X.
0.4565.20.89Ta.246.1.S1_atAF224499.1KNOTTED-1-like homeobox protein a /// KNOTTED-1-like homeobox protein d-4e-12At4g08150KNAT1 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA)O.I.H.G.S.X.
0.4260.90.78Ta.10366.1.S1_atBJ245066--5e+0At5g10320unknown proteinO.I.H.G.S.X.
0.4058.40.79Ta.7346.1.A1_atBJ300329--3e-1At5g09360LAC14 (laccase 14)O.I.H.G.S.X.
0.3854.70.88Ta.11111.1.A1_atBJ220256--3e-1At5g50290unknown proteinO.I.H.G.S.X.
0.3448.10.82TaAffx.120321.1.A1_s_atBJ231782--4e+0At5g10320unknown proteinO.I.H.G.S.X.
0.3346.90.82TaAffx.120321.1.A1_atBJ231782--4e+0At5g10320unknown proteinO.I.H.G.S.X.
0.3244.40.90TaAffx.107399.1.S1_atCA700321--4e+0At3g53600zinc finger (C2H2 type) family proteinO.I.H.G.S.X.
0.3040.90.81Ta.18486.1.S1_atCA637713--2e-1At1g72370P40O.I.H.G.S.X.
0.2735.60.84Ta.7448.1.A1_atBJ320729--1e-3At1g06700serine/threonine protein kinase, putativeO.I.H.G.S.X.
0.2735.60.91Ta.1813.1.S1_atBE445429--4e+0At1g80390IAA15 (INDOLE-3-ACETIC ACID INDUCIBLE 15)O.I.H.G.S.X.
0.2735.60.89TaAffx.91377.1.S1_atBJ322852WRKY3 transcription factor-3e-8At2g44745WRKY family transcription factorO.I.H.G.S.X.
0.2633.60.93Ta.1934.1.S1_atBQ166130--2e+0At1g67110CYP735A2O.I.H.G.S.X.
0.2532.10.86TaAffx.64059.1.S1_atBJ322833--2e+0At4g28750PSAE-1 (PSA E1 KNOCKOUT)O.I.H.G.S.X.
0.2532.10.82Ta.7275.1.S1_atCK215251--8e-2At3g52740unknown proteinO.I.H.G.S.X.
0.2532.10.93Ta.1934.2.S1_x_atCA645747--2e+1At5g46020unknown proteinO.I.H.G.S.X.
0.2532.10.93Ta.1934.3.S1_a_atCA636349--4e+0At2g48070RPH1 (RESISTANCE TO PHYTOPHTHORA 1)O.I.H.G.S.X.
0.2227.10.86Ta.26331.1.A1_atCD490731--8e-2At5g62290nucleotide-sensitive chloride conductance regulator (ICln) family proteinO.I.H.G.S.X.
0.2024.00.84Ta.14164.1.S1_s_atBJ226250--5e+0At2g32788-O.I.H.G.S.X.
0.1922.40.80Ta.11783.1.A1_atBQ170792--3e+0At5g67420LBD37 (LOB DOMAIN-CONTAINING PROTEIN 37)O.I.H.G.S.X.
0.1821.00.86TaAffx.11764.1.S1_atBQ170237--4e-1At5g21280hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.1618.20.82TaAffx.36832.1.S1_atBJ312654--1e-3At5g28630glycine-rich proteinO.I.H.G.S.X.
0.1415.80.82Ta.14164.1.S1_x_atBJ226250--5e+0At2g32788-O.I.H.G.S.X.
0.1213.30.71TaAffx.91646.1.A1_atBJ308816--2e-33At1g62360STM (SHOOT MERISTEMLESS)O.I.H.G.S.X.
0.1011.30.82Ta.13723.1.S1_atBQ484068--1e+0At1g69880ATH8 (thioredoxin H-type 8)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.898.4GSM298061Crown tissue of Harnesk at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
6.798.4GSM298062Crown tissue of Harnesk at 5 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
6.698.3GSM298076Crown tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
6.598.3GSM314269tissue type: immature inflorescence - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
6.198.1GSM298059Crown tissue of Harnesk at 3 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.797.9GSM298075Crown tissue of Paragon at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.797.9GSM298094Crown tissue of Solstice at 9 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.697.8GSM298060Crown tissue of Harnesk at 3 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.497.7GSM314270tissue type: immature inflorescence - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
5.397.6GSM298073Crown tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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