Co-expression analysis

Gene ID	Ta.7261.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g45410: unknown protein (HF=3e+0)
Module size	11 genes
NF	0.35
%ile	56.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	82.0	0.95	Ta.7261.1.S1_at	BJ216631	-	-	3e+0	At5g45410	unknown protein	O.I.	H.G.	S.X.	Please select
0.62	82.3	0.94	Ta.7981.1.S1_s_at	CK156422	-	-	4e-2	At3g61260	DNA-binding family protein / remorin family protein	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.95	Ta.28944.2.S1_a_at	CK161298	Ferritin	-	2e-10	At3g56090	ATFER3 (ferritin 3)	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.96	Ta.1321.1.S1_at	CA711483	-	-	2e+0	At5g09830	BolA-like family protein	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.95	Ta.4836.1.A1_x_at	BJ220331	-	-	9e-19	At1g63610	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.96	Ta.13731.1.S1_at	AY217753.1	-	-	6e-29	At5g13120	peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.95	Ta.1964.3.S1_x_at	CK213330	-	-	2e+0	At3g13500	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.95	Ta.1964.1.S1_x_at	CD890475	-	-	2e+0	At3g13500	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.96	Ta.2775.1.S1_at	AY057118.1	cold acclimation protein WCOR413-like protein beta form	-	2e+0	At4g09970	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.97	Ta.12501.1.A1_at	BQ171162	-	-	1e-1	At4g39580	kelch repeat-containing F-box family protein	O.I.	H.G.	S.X.	Please select
0.16	18.2	0.96	Ta.2899.1.S1_at	BQ789449	-	-	3e+0	At5g17400	ER-ANT1 (ENDOPLASMIC RETICULUM-DENINE NUCLEOTIDE TRANSPORTER 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.0	97.4	GSM298068	Leaf tissue of Paragon at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.3	96.7	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.0	96.3	GSM343686	Wheat var. Kennedy_Fp inoculated_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.9	96.1	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.9	96.1	GSM111216	genotype D15 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.7	95.8	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.6	95.6	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.6	95.6	GSM343685	Wheat var. Kennedy_control_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.6	95.6	GSM139917	Anther leptotene-pachytene rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.6	95.6	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage