CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.7147.3.S1_a_at

Gene name
Homology with Arabidopsis Similar to At3g54300: ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727) (HF=5e-3)

Module size 6 genes

NF 0.76

%ile 95.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 0.97 Ta.7147.3.S1_a_at BJ315882 - - 5e-3 At3g54300 ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727) O.I. H.G. S.X.
0.80 92.2 0.97 Ta.7147.3.S1_x_at BJ315882 - - 5e-3 At3g54300 ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727) O.I. H.G. S.X.
0.73 89.1 0.97 Ta.6082.1.S1_x_at BQ752961 - - 5e-1 At3g07590 small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative O.I. H.G. S.X.
0.67 86.3 0.97 Ta.6082.1.S1_at BQ752961 - - 5e-1 At3g07590 small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative O.I. H.G. S.X.
0.61 82.0 0.97 Ta.7147.2.S1_at CK161455 - - 9e-9 At3g54300 ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727) O.I. H.G. S.X.
0.53 74.9 0.96 Ta.8336.2.S1_a_at CA679198 - - 4e+0 At5g06270 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.4 99.5 GSM298071 Crown tissue of Paragon at 3 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
12.4 99.4 GSM298072 Crown tissue of Paragon at 3 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
7.8 98.7 GSM314284 tissue type: 22 DAP embryo - rep1 GSE12508 Transcription patterns during wheat development
7.0 98.5 GSM298076 Crown tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
4.7 97.1 GSM298075 Crown tissue of Paragon at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
3.6 95.6 GSM250914 Tc_7dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.5 95.4 GSM314286 tissue type: 22 DAP embryo - rep3 GSE12508 Transcription patterns during wheat development
3.3 95.0 GSM250908 Tc_7dpi_inoculated_rep2 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.3 95.0 GSM314285 tissue type: 22 DAP embryo - rep2 GSE12508 Transcription patterns during wheat development
3.2 94.8 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.97764.1.S1_at, orthologous to the query gene, Ta.7147.3.S1_a_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.2 PtpAffx.97764.1.S1_at At3g54300 hypothetical protein - 1e-38 At2g33120 SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1) O.I. H.G. S.X.
0.57 84.2 PtpAffx.158921.1.S1_s_at At3g54300 hypothetical protein - 5e-27 At1g76490 HMG1 (HYDROXY METHYLGLUTARYL COA REDUCTASE 1) O.I. H.G. S.X.
0.55 82.2 PtpAffx.20696.1.S1_at At3g54300 - - 4e-5 At1g65690 harpin-induced protein-related / HIN1-related / harpin-responsive protein-related O.I. H.G. S.X.
0.55 82.2 PtpAffx.56650.1.A1_s_at At3g54300 cytochrome P450 - 3e-2 At5g36220 CYP81D1 (CYTOCHROME P450 81D1) O.I. H.G. S.X.
0.47 74.6 PtpAffx.126410.1.S1_s_at At3g54300 hypothetical protein - 2e-18 At2g41690 AT-HSFB3 O.I. H.G. S.X.
0.44 71.9 PtpAffx.417.3.A1_a_at At3g54300 cytochrome P450 /// cytochrome P450 /// hypothetical protein - 3e-1 At3g44970 cytochrome P450 family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Vitis_vinifera
Zea_mays

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