Co-expression analysis

Gene ID	Ta.7147.3.S1_a_at
Gene name
Homology with Arabidopsis	Similar to At3g54300: ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727) (HF=5e-3)
Module size	6 genes
NF	0.76
%ile	95.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.97	Ta.7147.3.S1_a_at	BJ315882	-	-	5e-3	At3g54300	ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.97	Ta.7147.3.S1_x_at	BJ315882	-	-	5e-3	At3g54300	ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)	O.I.	H.G.	S.X.	Please select
0.73	89.1	0.97	Ta.6082.1.S1_x_at	BQ752961	-	-	5e-1	At3g07590	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.97	Ta.6082.1.S1_at	BQ752961	-	-	5e-1	At3g07590	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	O.I.	H.G.	S.X.	Please select
0.61	82.0	0.97	Ta.7147.2.S1_at	CK161455	-	-	9e-9	At3g54300	ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.96	Ta.8336.2.S1_a_at	CA679198	-	-	4e+0	At5g06270	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.4	99.5	GSM298071	Crown tissue of Paragon at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
12.4	99.4	GSM298072	Crown tissue of Paragon at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
7.8	98.7	GSM314284	tissue type: 22 DAP embryo - rep1	GSE12508	Transcription patterns during wheat development
7.0	98.5	GSM298076	Crown tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.7	97.1	GSM298075	Crown tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.6	95.6	GSM250914	Tc_7dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.5	95.4	GSM314286	tissue type: 22 DAP embryo - rep3	GSE12508	Transcription patterns during wheat development
3.3	95.0	GSM250908	Tc_7dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.3	95.0	GSM314285	tissue type: 22 DAP embryo - rep2	GSE12508	Transcription patterns during wheat development
3.2	94.8	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the barley gene, Contig4909_at, orthologous to the query gene, Ta.7147.3.S1_a_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	Contig4909_at	At3g54300	-	-	6e-4	At1g04750	VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)	O.I.	H.G.	S.X.	Please select
0.73	88.7	Contig9074_at	At3g54300	-	-	3e+0	At4g32950	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please select
0.67	84.7	Contig6141_s_at	At3g54300	-	-	6e-1	At3g54560	HTA11	O.I.	H.G.	S.X.	Please select
0.50	66.9	Contig14708_at	At3g54300	-	-	6e-4	At2g21960	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	56.4	Contig3654_s_at	At3g54300	-	-	2e-36	At3g20050	ATTCP-1	O.I.	H.G.	S.X.	Please select
0.35	45.1	Contig7380_at	At3g54300	-	-	2e-1	At3g01513	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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