Co-expression analysis

Gene ID Ta.7022.1.S1_x_at
Gene name
Homology with ArabidopsisSimilar to At3g10340: PAL4 (Phenylalanine ammonia-lyase 4) (HF=7e-11)
Module size 6 genes
NF 0.79
%ile 96.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.94Ta.7022.1.S1_x_atBJ281221--7e-11At3g10340PAL4 (Phenylalanine ammonia-lyase 4)O.I.H.G.S.X.
0.8092.20.91Ta.7022.1.S1_atBJ281221--7e-11At3g10340PAL4 (Phenylalanine ammonia-lyase 4)O.I.H.G.S.X.
0.8092.20.93Ta.7022.1.S1_s_atBJ281221--7e-11At3g10340PAL4 (Phenylalanine ammonia-lyase 4)O.I.H.G.S.X.
0.7389.10.90TaAffx.45277.1.S1_x_atBJ231180--1e-14At3g53260PAL2O.I.H.G.S.X.
0.6383.10.92Ta.7022.2.S1_x_atBF199967--5e-1At1g19320pathogenesis-related thaumatin family proteinO.I.H.G.S.X.
0.5779.20.92Ta.7022.2.S1_atBF199967--5e-1At1g19320pathogenesis-related thaumatin family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.199.6GSM143521Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 1GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
13.999.5GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
13.199.4GSM138149genotype F29 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
10.499.2GSM138195genotype J15 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
9.899.1GSM138178genotype A88 developing seed at 5 days after anthesis, biological rep1GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
9.399.0GSM138162genotype E5 developing seed at 5 days after anthesis, biological rep1GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
9.199.0GSM111250genotype A35 developing seed at 5 days after anthesis, biological rep1GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
8.398.8GSM138154genotype H5 developing seed at 5 days after anthesis, biological rep1GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
6.498.2GSM138188genotype F38a developing seed at 5 days after anthesis, biological rep1GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
6.398.2GSM138169genotype B68 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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