Co-expression analysis

Gene ID Ta.6990.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g15520: PDR12 (PLEIOTROPIC DRUG RESISTANCE 12) (HF=7e-11)
Module size 9 genes
NF 0.28
%ile 46.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7589.80.92Ta.6990.1.S1_atCA611113--7e-11At1g15520PDR12 (PLEIOTROPIC DRUG RESISTANCE 12)O.I.H.G.S.X.
0.6786.30.92Ta.29531.1.S1_x_atCA685752--1e+0At1g73610GDSL-motif lipase/hydrolase family proteinO.I.H.G.S.X.
0.5576.80.91Ta.29531.2.S1_x_atCA662139--1e-2At1g44970peroxidase, putativeO.I.H.G.S.X.
0.2839.20.91TaAffx.27124.1.S1_s_atCD875053--2e+0At1g25280AtTLP10 (TUBBY LIKE PROTEIN 10)O.I.H.G.S.X.
0.2839.20.92Ta.22475.1.S1_atCD861726--1e+0At2g41340RPB5D (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, D)O.I.H.G.S.X.
0.2329.00.92Ta.5324.1.A1_atBJ280786--5e+0At5g46160ribosomal protein L14 family protein / huellenlos paralog (HLP)O.I.H.G.S.X.
0.1922.40.93Ta.280.1.S1_s_atAF384144.1MLo1 protein /// MLo protein /// seven transmembrane-spanning protein-6e-2At1g42560MLO9 (MILDEW RESISTANCE LOCUS O 9)O.I.H.G.S.X.
0.1821.00.93TaAffx.70347.1.S1_atCA682075--2e+1At5g15830AtbZIP3 (Arabidopsis thaliana basic leucine-zipper 3)O.I.H.G.S.X.
0.1719.80.92Ta.11774.1.A1_atBQ170770--2e-1At4g28530anac074 (Arabidopsis NAC domain containing protein 74)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
23.299.8GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
14.499.5GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
6.198.1GSM298068Leaf tissue of Paragon at 5 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.497.7GSM298057Leaf tissue of Harnesk at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.897.2GSM298058Leaf tissue of Harnesk at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.697.0GSM143507Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 3GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
4.396.7GSM143520Thatcher_Lr34 (susceptible), rust inoculated distal leaf, replication 3GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
4.296.6GSM143506Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
4.296.6GSM143518Thatcher_Lr34 (susceptible), rust inoculated distal leaf, replication 1GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
4.196.4GSM143503Thatcher_Lr34 (resistant), rust inoculated basal leaf, replication 2GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage