Co-expression analysis

Gene ID	Ta.6968.2.S1_a_at
Gene name
Homology with Arabidopsis	Similar to At5g03520: ATRAB8C (HF=2e-33)
Module size	6 genes
NF	0.43
%ile	68.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.3	0.97	Ta.6968.2.S1_a_at	CA604796	-	-	2e-33	At5g03520	ATRAB8C	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.97	Ta.3496.2.S1_a_at	CA630377	-	-	3e-1	At1g31250	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.48	69.0	0.96	Ta.18528.2.S1_a_at	CA596497	-	-	4e-37	At2g32980	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.97	Ta.6867.3.A1_a_at	BJ228637	-	-	1e+0	At1g17147	-	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.97	Ta.3797.3.S1_a_at	CA602105	-	-	2e+1	At5g11425	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.97	Ta.3797.3.S1_x_at	CA602105	-	-	2e+1	At5g11425	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.3	95.0	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.9	94.0	GSM298076	Crown tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
2.5	92.5	GSM314269	tissue type: immature inflorescence - rep1	GSE12508	Transcription patterns during wheat development
2.5	92.5	GSM314275	tissue type: pistil, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
2.5	92.5	GSM298060	Crown tissue of Harnesk at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
2.4	92.0	GSM298072	Crown tissue of Paragon at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
2.4	92.0	GSM298074	Crown tissue of Paragon at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
2.4	92.0	GSM314277	tissue type: pistil, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
2.4	92.0	GSM298062	Crown tissue of Harnesk at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
2.3	91.5	GSM298061	Crown tissue of Harnesk at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.14585.3.S1_at, orthologous to the query gene, Ta.6968.2.S1_a_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	86.0	PtpAffx.14585.3.S1_at	At5g03520	hypothetical protein	-	2e-133	At3g46060	ATRAB8A	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.75	94.1	PtpAffx.111323.1.S1_s_at	At5g03520	hypothetical protein	-	3e-14	At4g02050	sugar transporter, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.71	92.6	Ptp.1953.1.S1_at	At5g03520	hypothetical protein	-	8e-18	At5g43460	lesion inducing protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	Ptp.1635.1.S1_s_at	At5g03520	hypothetical protein	-	4e-51	At3g53620	AtPPa4 (Arabidopsis thaliana pyrophosphorylase 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	PtpAffx.103624.1.A1_at	At5g03520	-	-	1e-3	At5g54130	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.119069.1.S1_at	At5g03520	-	-	1e+0	At4g34590	GBF6 (G-BOX BINDING FACTOR 6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	Ptp.1790.1.S1_at	At5g03520	hypothetical protein	-	2e-12	At2g43040	NPG1 (no pollen germination 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

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