CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.6968.2.S1_a_at

Gene name
Homology with Arabidopsis Similar to At5g03520: ATRAB8C (HF=2e-33)

Module size 6 genes

NF 0.43

%ile 68.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 86.3 0.97 Ta.6968.2.S1_a_at CA604796 - - 2e-33 At5g03520 ATRAB8C O.I. H.G. S.X.
0.50 72.4 0.97 Ta.3496.2.S1_a_at CA630377 - - 3e-1 At1g31250 proline-rich family protein O.I. H.G. S.X.
0.48 69.0 0.96 Ta.18528.2.S1_a_at CA596497 - - 4e-37 At2g32980 unknown protein O.I. H.G. S.X.
0.42 60.9 0.97 Ta.6867.3.A1_a_at BJ228637 - - 1e+0 At1g17147 - O.I. H.G. S.X.
0.30 40.9 0.97 Ta.3797.3.S1_a_at CA602105 - - 2e+1 At5g11425 unknown protein O.I. H.G. S.X.
0.29 39.2 0.97 Ta.3797.3.S1_x_at CA602105 - - 2e+1 At5g11425 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.3 95.0 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.9 94.0 GSM298076 Crown tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
2.5 92.5 GSM314269 tissue type: immature inflorescence - rep1 GSE12508 Transcription patterns during wheat development
2.5 92.5 GSM314275 tissue type: pistil, before anthesis - rep1 GSE12508 Transcription patterns during wheat development
2.5 92.5 GSM298060 Crown tissue of Harnesk at 3 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
2.4 92.0 GSM298072 Crown tissue of Paragon at 3 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
2.4 92.0 GSM298074 Crown tissue of Paragon at 5 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
2.4 92.0 GSM314277 tissue type: pistil, before anthesis - rep3 GSE12508 Transcription patterns during wheat development
2.4 92.0 GSM298062 Crown tissue of Harnesk at 5 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
2.3 91.5 GSM298061 Crown tissue of Harnesk at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g03520, orthologous to the query gene, Ta.6968.2.S1_a_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.44 57.2 At5g03520 831817 ATRAB8C F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:unknown;MOFPBVA O.I. H.G. S.X.
0.44 57.2 At3g23750 821957 leucine-rich repeat family protein / protein kinase family protein F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. H.G. S.X.
0.40 50.8 At5g56170 835716 - F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P O.I. H.G. S.X.
0.31 33.8 At1g20090 838598 ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2) Member of the Rho GTPase family. Functions to organize the microtubular cytoskeleton in combination with RIC1 and RIC4. These interactions affect pavement cell morphogenesis and pollen tube growth. ROP2 expression is stimulated by brassinosteroid treatment. Inhibit light-induced stomatal opening. O.I. H.G. S.X.
0.11 4.1 At5g66200 836752 ARO2 (ARMADILLO REPEAT ONLY 2) Armadillo repeat protein. One of a family of four in Arabidopsis. Expressed in vegetative tissues, anthers and ovules. O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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