Co-expression analysis

Gene ID	Ta.6965.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g03847: auxin-responsive family protein (HF=3e+0)
Module size	6 genes
NF	0.67
%ile	91.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	92.2	0.96	Ta.6965.1.S1_at	BJ313225	-	-	3e+0	At3g03847	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.94	Ta.10650.1.A1_at	BQ166187	-	-	4e+0	At4g24026	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.94	TaAffx.91428.1.S1_at	BJ313181	-	-	3e+0	At4g21450	vesicle-associated membrane family protein / VAMP family protein	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.95	TaAffx.16068.1.S1_at	BQ168935	-	-	1e+0	At1g33260	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.57	79.2	0.95	Ta.14323.1.S1_at	BU100287	-	-	1e+1	At4g18593	dual specificity protein phosphatase-related	O.I.	H.G.	S.X.	Please select
0.48	69.0	0.92	Ta.15859.1.S1_at	BJ310415	-	-	1e+0	At5g50070	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.7	97.9	GSM343678	Wheat var. Kennedy_control_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
5.7	97.9	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.5	97.8	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.9	97.3	GSM343682	Wheat var. Kennedy_control_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
4.5	96.9	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
4.1	96.4	GSM343685	Wheat var. Kennedy_control_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.6	95.6	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.5	95.4	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.5	95.4	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.3	95.0	GSM139914	Anther pre-meiosis rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat

Inter-species module comparison

A co-expression module including the grape gene, 1607248_at, orthologous to the query gene, Ta.6965.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.78	92.6	1607248_at	At3g03847	hypothetical protein LOC100242432	-	4e+0	At2g12977	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	77.3	1611248_at	At3g03847	hypothetical protein LOC100241262	-	6e-54	At5g56130	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.40	57.7	1614974_at	At3g03847	-	-	1e+0	At1g47770	beta-galactosidase	O.I.	H.G.	S.X.	Please select
0.31	41.3	1612365_s_at	At3g03847	hypothetical protein LOC100241678	-	3e-1	At1g76930	ATEXT4 (EXTENSIN 4)	O.I.	H.G.	S.X.	Please select
0.25	30.5	1607124_at	At3g03847	hypothetical protein LOC100242432	-	1e-31	At3g59910	-	O.I.	H.G.	S.X.	Please select
0.21	24.0	1607608_at	At3g03847	hypothetical protein LOC100251222	-	3e-1	At5g58800	quinone reductase family protein	O.I.	H.G.	S.X.	Please select
0.17	18.2	1622113_at	At3g03847	hypothetical protein LOC100245719	-	4e-61	At5g15050	glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein	O.I.	H.G.	S.X.	Please select
0.15	15.6	1616777_at	At3g03847	hypothetical protein LOC100259075	-	2e-22	At3g51040	RTH (RTE1-HOMOLOG)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

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