Co-expression analysis

Gene ID	Ta.6945.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At3g09940: MDHAR (MONODEHYDROASCORBATE REDUCTASE) (HF=3e+0)
Module size	6 genes
NF	0.27
%ile	45.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	83.1	0.95	Ta.6945.1.A1_at	BJ319268	-	-	3e+0	At3g09940	MDHAR (MONODEHYDROASCORBATE REDUCTASE)	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.96	Ta.3322.3.S1_a_at	CA649562	-	-	2e-5	At4g18030	dehydration-responsive family protein	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.95	Ta.6945.1.A1_a_at	BJ319268	-	-	3e+0	At3g09940	MDHAR (MONODEHYDROASCORBATE REDUCTASE)	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.95	Ta.3322.1.S1_s_at	CK208679	-	-	4e-50	At1g26850	dehydration-responsive family protein	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.95	Ta.10569.1.A1_at	CK208173	-	-	1e+0	At5g18590	kelch repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.12	13.3	0.95	Ta.16760.1.S1_at	CA611994	-	-	6e-48	At5g52920	PKP-BETA1 (PLASTIDIC PYRUVATE KINASE BETA SUBUNIT 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.5	97.8	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
5.0	97.4	GSM139930	Anther immature pollen rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.3	96.7	GSM139917	Anther leptotene-pachytene rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.2	96.6	GSM139918	Anther leptotene-pachytene rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.0	96.3	GSM139923	Anther telophaseI-telophaseII rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.8	96.0	GSM314251	tissue type: germinating seed, coleoptile - rep1	GSE12508	Transcription patterns during wheat development
3.7	95.8	GSM139926	Anther tetrads rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.5	95.4	GSM139920	Anther diplotene-anaphaseI rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.5	95.4	GSM139922	Anther telophaseI-telophaseII rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.5	95.4	GSM139914	Anther pre-meiosis rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat

Inter-species module comparison

A co-expression module including the maize gene, Zm.344.1.A1_at, orthologous to the query gene, Ta.6945.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	96.3	Zm.344.1.A1_at	At3g09940	OCL4 protein	-	2e-6	At5g46880	HB-7 (HOMEOBOX-7)	O.I.	H.G.	S.X.	Please select
0.60	77.8	Zm.3445.1.S1_at	At3g09940	hypothetical protein LOC100278372	-	4e+0	At4g08230	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.45	56.4	Zm.14048.1.A1_at	At3g09940	hypothetical protein LOC100191672	-	5e-30	At3g02630	acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative	O.I.	H.G.	S.X.	Please select
0.41	49.7	Zm.512.1.A1_at	At3g09940	nucleosome/chromatin assembly factor C	-	9e-69	At2g19520	FVE	O.I.	H.G.	S.X.	Please select
0.31	31.6	Zm.13164.1.A1_at	At3g09940	-	-	8e-1	At1g22380	AtUGT85A3 (UDP-glucosyl transferase 85A3)	O.I.	H.G.	S.X.	Please select
0.30	29.8	Zm.1650.1.A1_at	At3g09940	hypothetical protein LOC100272243	-	5e-1	At3g26235	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	Zm.4030.1.A1_at	At3g09940	-	-	1e+0	At1g17210	zinc ion binding	O.I.	H.G.	S.X.	Please select
0.22	16.9	Zm.14270.3.A1_x_at	At3g09940	Hypothetical protein LOC100216603	-	3e-1	At5g66980	transcriptional factor B3 family protein	O.I.	H.G.	S.X.	Please select
0.22	16.9	Zm.4099.2.S1_at	At3g09940	Hypothetical protein LOC100191159	-	8e-1	At2g38870	protease inhibitor, putative	O.I.	H.G.	S.X.	Please select
0.21	15.5	Zm.13691.1.S1_at	At3g09940	inositolphosphorylceramide-B C-26 hydroxylase	-	7e-13	At2g34770	FAH1 (FATTY ACID HYDROXYLASE 1)	O.I.	H.G.	S.X.	Please select
0.20	14.2	Zm.18403.1.A1_at	At3g09940	hypothetical protein LOC100274307	-	5e-3	At5g38120	4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein	O.I.	H.G.	S.X.	Please select
0.20	14.2	Zm.3015.1.S2_at	At3g09940	hypothetical protein LOC100272395	-	2e-154	At1g54270	EIF4A-2	O.I.	H.G.	S.X.	Please select
0.19	12.8	Zm.409.1.S1_at	At3g09940	cell wall invertase1	-	3e-1	At5g39170	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	11.6	Zm.3550.1.A1_at	At3g09940	sucrose synthase1	-	8e-12	At3g43190	SUS4	O.I.	H.G.	S.X.	Please select
0.18	11.6	Zm.15899.1.A1_a_at	At3g09940	Hypothetical protein LOC100193182	-	3e-2	At2g32100	OFP16 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16)	O.I.	H.G.	S.X.	Please select
0.18	11.6	ZmAffx.17.1.S1_at	At3g09940	-	-	1e+1	At2g16535	-	O.I.	H.G.	S.X.	Please select
0.17	10.6	Zm.12719.1.S1_at	At3g09940	bromodomain protein 103	-	1e-57	At1g05910	cell division cycle protein 48-related / CDC48-related	O.I.	H.G.	S.X.	Please select
0.13	6.8	Zm.16272.1.A1_at	At3g09940	-	-	3e+0	At4g11020	unknown protein	O.I.	H.G.	S.X.	Please select
0.10	4.6	Zm.1491.1.A1_at	At3g09940	hypothetical protein LOC100278490	-	7e-2	At4g17670	senescence-associated protein-related	O.I.	H.G.	S.X.	Please select
0.07	2.9	Zm.7662.1.A1_at	At3g09940	-	-	1e+0	At4g03153	kinase interacting family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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