Co-expression analysis

Gene ID	Ta.6945.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At3g09940: MDHAR (MONODEHYDROASCORBATE REDUCTASE) (HF=3e+0)
Module size	6 genes
NF	0.27
%ile	45.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	83.1	0.95	Ta.6945.1.A1_at	BJ319268	-	-	3e+0	At3g09940	MDHAR (MONODEHYDROASCORBATE REDUCTASE)	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.96	Ta.3322.3.S1_a_at	CA649562	-	-	2e-5	At4g18030	dehydration-responsive family protein	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.95	Ta.6945.1.A1_a_at	BJ319268	-	-	3e+0	At3g09940	MDHAR (MONODEHYDROASCORBATE REDUCTASE)	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.95	Ta.3322.1.S1_s_at	CK208679	-	-	4e-50	At1g26850	dehydration-responsive family protein	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.95	Ta.10569.1.A1_at	CK208173	-	-	1e+0	At5g18590	kelch repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.12	13.3	0.95	Ta.16760.1.S1_at	CA611994	-	-	6e-48	At5g52920	PKP-BETA1 (PLASTIDIC PYRUVATE KINASE BETA SUBUNIT 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.5	97.8	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
5.0	97.4	GSM139930	Anther immature pollen rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.3	96.7	GSM139917	Anther leptotene-pachytene rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.2	96.6	GSM139918	Anther leptotene-pachytene rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.0	96.3	GSM139923	Anther telophaseI-telophaseII rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.8	96.0	GSM314251	tissue type: germinating seed, coleoptile - rep1	GSE12508	Transcription patterns during wheat development
3.7	95.8	GSM139926	Anther tetrads rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.5	95.4	GSM139920	Anther diplotene-anaphaseI rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.5	95.4	GSM139922	Anther telophaseI-telophaseII rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.5	95.4	GSM139914	Anther pre-meiosis rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat

Inter-species module comparison

A co-expression module including the grape gene, 1620832_at, orthologous to the query gene, Ta.6945.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	1620832_at	At3g09940	-	-	1e+1	At1g52440	-	O.I.	H.G.	S.X.	Please select
0.09	9.4	1622053_at	At3g09940	-	-	7e-8	At5g11060	KNAT4 (KNOTTED1-LIKE HOMEOBOX GENE 4)	O.I.	H.G.	S.X.	Please select
0.02	3.2	1612860_at	At3g09940	hypothetical protein LOC100261292	-	4e-54	At3g22950	ATARFC1 (ADP-ribosylation factor C1)	O.I.	H.G.	S.X.	Please select
0.01	2.1	1621756_at	At3g09940	hypothetical protein LOC100260561	-	1e-25	At1g61780	postsynaptic protein-related	O.I.	H.G.	S.X.	Please select
0.01	2.1	1613987_s_at	At3g09940	hypothetical protein LOC100245893	-	3e-29	At2g16710	hesB-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.00	0.5	1620993_at	At3g09940	-	-	1e+1	At5g09270	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

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