CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.6945.1.A1_at

Gene name
Homology with Arabidopsis Similar to At3g09940: MDHAR (MONODEHYDROASCORBATE REDUCTASE) (HF=3e+0)

Module size 6 genes

NF 0.27

%ile 45.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 83.1 0.95 Ta.6945.1.A1_at BJ319268 - - 3e+0 At3g09940 MDHAR (MONODEHYDROASCORBATE REDUCTASE) O.I. H.G. S.X.
0.44 64.5 0.96 Ta.3322.3.S1_a_at CA649562 - - 2e-5 At4g18030 dehydration-responsive family protein O.I. H.G. S.X.
0.25 32.1 0.95 Ta.6945.1.A1_a_at BJ319268 - - 3e+0 At3g09940 MDHAR (MONODEHYDROASCORBATE REDUCTASE) O.I. H.G. S.X.
0.23 29.0 0.95 Ta.3322.1.S1_s_at CK208679 - - 4e-50 At1g26850 dehydration-responsive family protein O.I. H.G. S.X.
0.17 19.8 0.95 Ta.10569.1.A1_at CK208173 - - 1e+0 At5g18590 kelch repeat-containing protein O.I. H.G. S.X.
0.12 13.3 0.95 Ta.16760.1.S1_at CA611994 - - 6e-48 At5g52920 PKP-BETA1 (PLASTIDIC PYRUVATE KINASE BETA SUBUNIT 1) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.5 97.8 GSM139928 Anther immature pollen rep1 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
5.0 97.4 GSM139930 Anther immature pollen rep3 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.3 96.7 GSM139917 Anther leptotene-pachytene rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.2 96.6 GSM139918 Anther leptotene-pachytene rep3 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.0 96.3 GSM139923 Anther telophaseI-telophaseII rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.8 96.0 GSM314251 tissue type: germinating seed, coleoptile - rep1 GSE12508 Transcription patterns during wheat development
3.7 95.8 GSM139926 Anther tetrads rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.5 95.4 GSM139920 Anther diplotene-anaphaseI rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.5 95.4 GSM139922 Anther telophaseI-telophaseII rep1 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.5 95.4 GSM139914 Anther pre-meiosis rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.203875.1.S1_at, orthologous to the query gene, Ta.6945.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 78.6 PtpAffx.203875.1.S1_at At3g09940 hypothetical protein - 1e-21 At1g28340 AtRLP4 (Receptor Like Protein 4) O.I. H.G. S.X.
0.63 88.1 PtpAffx.108288.1.A1_at At3g09940 - - 2e-18 At4g14965 AtMAPR4 (Arabidopsis thaliana membrane-associated progesterone binding protein 4) O.I. H.G. S.X.
0.44 71.9 PtpAffx.202547.1.S1_at At3g09940 hypothetical protein - 3e+0 At3g20930 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.40 67.0 PtpAffx.16081.1.S1_a_at At3g09940 hypothetical protein - 4e-1 At1g21360 GLTP2 (glycolipid transfer protein 2) O.I. H.G. S.X.
0.33 57.5 Ptp.2307.1.S1_at At3g09940 hypothetical protein - 2e-16 At3g06330 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.22 38.3 PtpAffx.88369.1.A1_at At3g09940 hypothetical protein - 2e-1 At3g09860 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Vitis_vinifera
Zea_mays

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