Co-expression analysis

Gene ID	Ta.6823.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g12910: ATAN11 (ANTHOCYANIN11) (HF=7e-9)
Module size	15 genes
NF	0.27
%ile	44.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.79	91.3	0.97	Ta.6823.1.A1_at	BQ168375	-	-	7e-9	At1g12910	ATAN11 (ANTHOCYANIN11)	O.I.	H.G.	S.X.	Please select
0.52	73.7	0.97	TaAffx.2372.2.S1_at	BJ253908	-	-	7e-2	At4g12790	ATP-binding family protein	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.98	Ta.20408.1.S1_a_at	BJ273791	-	-	1e-2	At3g15160	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.98	TaAffx.22421.1.S1_at	BQ245262	-	-	2e-8	At5g23450	ATLCBK1 (A. THALIANA LONG-CHAIN BASE (LCB) KINASE 1)	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.98	Ta.10983.1.S1_a_at	BQ166964	-	-	3e+0	At3g53530	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.98	Ta.10453.2.S1_a_at	BJ215444	-	-	7e-2	At5g17510	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.98	Ta.20453.1.S1_at	CD932281	-	-	3e-2	At4g39745	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.97	Ta.6936.1.S1_x_at	BJ217420	-	-	2e-9	At1g11475	NRPB10	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.98	Ta.21252.3.S1_at	CA630645	-	-	1e+0	At2g45640	SAP18 (SIN3 ASSOCIATED POLYPEPTIDE P18)	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.98	Ta.22567.1.S1_x_at	CA689116	-	-	3e-6	At1g11360	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.98	Ta.1103.2.A1_x_at	BJ218023	-	-	1e+0	At5g53742	-	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.98	Ta.2041.2.S1_a_at	CA606956	-	-	2e-6	At3g12760	-	O.I.	H.G.	S.X.	Please select
0.16	18.2	0.97	Ta.7549.1.S1_at	CK167800	-	-	7e-2	At1g21700	ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C)	O.I.	H.G.	S.X.	Please select
0.15	17.1	0.98	Ta.7610.1.S1_a_at	CD889532	-	-	1e-6	At5g11560	catalytic	O.I.	H.G.	S.X.	Please select
0.11	12.4	0.97	Ta.3604.1.S1_at	CK166702	-	-	4e-1	At1g29850	double-stranded DNA-binding family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.2	99.0	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
6.4	98.2	GSM314286	tissue type: 22 DAP embryo - rep3	GSE12508	Transcription patterns during wheat development
5.6	97.8	GSM314285	tissue type: 22 DAP embryo - rep2	GSE12508	Transcription patterns during wheat development
4.9	97.3	GSM314284	tissue type: 22 DAP embryo - rep1	GSE12508	Transcription patterns during wheat development
4.6	97.0	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.4	96.8	GSM324485	Si- B- rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.9	96.1	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
3.3	95.0	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.3	95.0	GSM314274	tissue type: floral bracts, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
3.3	95.0	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage