Co-expression analysis

Gene ID	Ta.6666.3.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At3g03180: Got1-like family protein (HF=4e-3)
Module size	6 genes
NF	0.61
%ile	86.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	72.4	0.97	Ta.6666.3.S1_x_at	CA720211	-	-	4e-3	At3g03180	Got1-like family protein	O.I.	H.G.	S.X.	Please select
0.83	93.4	0.96	Ta.6666.2.S1_x_at	CA640317	-	-	5e-12	At3g49420	Got1-like family protein	O.I.	H.G.	S.X.	Please select
0.73	89.1	0.96	Ta.5522.2.S1_a_at	CA699425	-	-	1e+0	At2g13150	transcription factor	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.96	Ta.6666.2.S1_at	CA640317	-	-	5e-12	At3g49420	Got1-like family protein	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.96	TaAffx.105929.1.S1_at	BJ226774	-	-	4e+0	At5g19875	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.96	TaAffx.32308.1.S1_at	CA597142	-	-	1e+0	At2g19670	PRMT1A (PROTEIN ARGININE METHYLTRANSFERASE 1A)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.9	99.6	GSM314275	tissue type: pistil, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
14.8	99.5	GSM314277	tissue type: pistil, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
13.7	99.5	GSM314276	tissue type: pistil, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
5.9	98.0	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.5	95.4	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.0	94.3	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
2.7	93.3	GSM314279	tissue type: anthers, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
2.5	92.5	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.4	92.0	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
2.3	91.5	GSM343685	Wheat var. Kennedy_control_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum

Inter-species module comparison

A co-expression module including the maize gene, Zm.4348.1.A1_at, orthologous to the query gene, Ta.6666.3.S1_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.96	99.8	Zm.4348.1.A1_at	At3g03180	golgi transport 1 protein B	-	7e-6	At3g49420	Got1-like family protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	Zm.17585.1.S1_at	At3g03180	palmitoyltransferase ZDHHC20	-	1e-11	At4g22750	zinc finger (DHHC type) family protein	O.I.	H.G.	S.X.	Please select
0.49	61.9	Zm.463.1.A1_at	At3g03180	viviparous14	-	5e-6	At3g14440	NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 3)	O.I.	H.G.	S.X.	Please select
0.47	59.9	Zm.6448.1.A1_at	At3g03180	antigenic determinant of rec-A protein	-	3e-18	At1g55460	Kin17 DNA-binding protein-related	O.I.	H.G.	S.X.	Please select
0.41	49.7	Zm.4493.1.A1_at	At3g03180	hypothetical protein LOC100279480	-	4e-1	At2g29780	kelch repeat-containing F-box family protein	O.I.	H.G.	S.X.	Please select
0.41	49.7	Zm.13648.1.S1_at	At3g03180	caleosin related protein	-	2e+0	At1g70670	caleosin-related family protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	Zm.16573.1.A1_at	At3g03180	-	-	2e+0	At1g78710	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	44.2	Zm.14496.1.A1_at	At3g03180	sesquiterpene cyclase-like	-	1e+0	At5g46710	zinc-binding family protein	O.I.	H.G.	S.X.	Please select
0.35	38.9	Zm.6293.1.A1_at	At3g03180	hypothetical protein LOC100216905	-	4e+0	At5g08400	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	Zm.10534.1.A1_x_at	At3g03180	receptor protein kinase CLAVATA1	-	2e+0	At2g36890	RAX2 (REGULATOR OF AXILLARY MERISTEMS 2)	O.I.	H.G.	S.X.	Please select
0.33	36.0	Zm.15542.1.S1_at	At3g03180	-	-	2e-2	At4g29080	PAP2 (PHYTOCHROME-ASSOCIATED PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.32	33.4	ZmAffx.1206.1.S1_s_at	At3g03180	-	-	2e+0	At2g33370	60S ribosomal protein L23 (RPL23B)	O.I.	H.G.	S.X.	Please select
0.31	31.6	Zm.4.1.S1_at	At3g03180	ferredoxin3	-	2e+0	At1g10960	ATFD1 (FERREDOXIN 1)	O.I.	H.G.	S.X.	Please select
0.30	29.8	Zm.13581.1.A1_at	At3g03180	-	-	2e-4	At5g65460	kinesin motor protein-related	O.I.	H.G.	S.X.	Please select
0.30	29.8	Zm.13788.1.S1_at	At3g03180	thioredoxin reductase 2	-	5e-5	At4g35460	NTRB (NADPH-DEPENDENT THIOREDOXIN REDUCTASE B)	O.I.	H.G.	S.X.	Please select
0.29	28.1	Zm.2072.1.S1_at	At3g03180	-	-	7e-1	At5g14260	SET domain-containing protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	Zm.6863.2.A1_at	At3g03180	hypothetical protein LOC100193970	-	7e-67	At1g48410	AGO1 (ARGONAUTE 1)	O.I.	H.G.	S.X.	Please select
0.29	28.1	Zm.5161.1.S1_at	At3g03180	leafbladeless1	-	1e+0	At1g54170	CID3 (CTC-Interacting Domain 3)	O.I.	H.G.	S.X.	Please select
0.27	24.6	Zm.18791.1.A1_at	At3g03180	-	-	2e-23	At4g30900	-	O.I.	H.G.	S.X.	Please select
0.27	24.6	Zm.13825.1.S1_at	At3g03180	-	-	9e-7	At3g01910	SOX (SULFITE OXIDASE)	O.I.	H.G.	S.X.	Please select
0.27	24.6	Zm.15705.1.A1_at	At3g03180	-	-	1e-4	At4g38270	GAUT3 (Galacturonosyltransferase 3)	O.I.	H.G.	S.X.	Please select
0.27	24.6	Zm.2378.1.A1_at	At3g03180	-	-	8e-10	At1g70750	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	21.3	Zm.4137.1.S1_at	At3g03180	-	-	2e+0	At4g21330	DYT1 (DYSFUNCTIONAL TAPETUM 1)	O.I.	H.G.	S.X.	Please select
0.25	21.3	Zm.2997.1.S1_at	At3g03180	REX1 DNA Repair family protein	-	6e+0	At5g35525	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	16.9	Zm.218.1.A1_a_at	At3g03180	ABA stimulation MAP kinase	-	6e-42	At2g43790	ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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