CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.6666.3.S1_x_at

Gene name
Homology with Arabidopsis Similar to At3g03180: Got1-like family protein (HF=4e-3)

Module size 6 genes

NF 0.61

%ile 86.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 72.4 0.97 Ta.6666.3.S1_x_at CA720211 - - 4e-3 At3g03180 Got1-like family protein O.I. H.G. S.X.
0.83 93.4 0.96 Ta.6666.2.S1_x_at CA640317 - - 5e-12 At3g49420 Got1-like family protein O.I. H.G. S.X.
0.73 89.1 0.96 Ta.5522.2.S1_a_at CA699425 - - 1e+0 At2g13150 transcription factor O.I. H.G. S.X.
0.67 86.3 0.96 Ta.6666.2.S1_at CA640317 - - 5e-12 At3g49420 Got1-like family protein O.I. H.G. S.X.
0.47 67.9 0.96 TaAffx.105929.1.S1_at BJ226774 - - 4e+0 At5g19875 unknown protein O.I. H.G. S.X.
0.27 35.6 0.96 TaAffx.32308.1.S1_at CA597142 - - 1e+0 At2g19670 PRMT1A (PROTEIN ARGININE METHYLTRANSFERASE 1A) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.9 99.6 GSM314275 tissue type: pistil, before anthesis - rep1 GSE12508 Transcription patterns during wheat development
14.8 99.5 GSM314277 tissue type: pistil, before anthesis - rep3 GSE12508 Transcription patterns during wheat development
13.7 99.5 GSM314276 tissue type: pistil, before anthesis - rep2 GSE12508 Transcription patterns during wheat development
5.9 98.0 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.5 95.4 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.0 94.3 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
2.7 93.3 GSM314279 tissue type: anthers, before anthesis - rep2 GSE12508 Transcription patterns during wheat development
2.5 92.5 GSM250897 TcLr1_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.4 92.0 GSM314261 tissue type: seedling, root - rep2 GSE12508 Transcription patterns during wheat development
2.3 91.5 GSM343685 Wheat var. Kennedy_control_rep3 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.1321.2.S1_a_at, orthologous to the query gene, Ta.6666.3.S1_x_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 93.6 PtpAffx.1321.2.S1_a_at At3g03180 hypothetical protein - 1e-41 At3g49420 Got1-like family protein O.I. H.G. S.X.
0.61 87.0 PtpAffx.45054.1.S1_at At3g03180 hypothetical protein - 8e-18 At2g31510 IBR domain-containing protein / ARIADNE-like protein ARI7 (ARI7) O.I. H.G. S.X.
0.46 73.7 PtpAffx.64889.1.S1_s_at At3g03180 hypothetical protein - 3e+0 At5g22920 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.32 55.2 PtpAffx.110616.1.A1_at At3g03180 hypothetical protein - 3e-55 At2g26890 GRV2 (GRAVITROPISM DEFECTIVE 2) O.I. H.G. S.X.
0.31 53.7 PtpAffx.105803.2.S1_a_at At3g03180 hypothetical protein - 7e-14 At2g35110 GRL (GNARLED) O.I. H.G. S.X.
0.25 43.6 PtpAffx.7001.1.S1_s_at At3g03180 hypothetical protein - 2e+0 At2g34570 MEE21 (maternal effect embryo arrest 21) O.I. H.G. S.X.
0.18 30.8 Ptp.6480.1.S1_x_at At3g03180 hypothetical protein - 1e-66 At5g53300 UBC10 (ubiquitin-conjugating enzyme 10) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Vitis_vinifera
Zea_mays

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