Co-expression analysis

Gene ID	Ta.6666.3.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At3g03180: Got1-like family protein (HF=4e-3)
Module size	6 genes
NF	0.61
%ile	86.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	72.4	0.97	Ta.6666.3.S1_x_at	CA720211	-	-	4e-3	At3g03180	Got1-like family protein	O.I.	H.G.	S.X.	Please select
0.83	93.4	0.96	Ta.6666.2.S1_x_at	CA640317	-	-	5e-12	At3g49420	Got1-like family protein	O.I.	H.G.	S.X.	Please select
0.73	89.1	0.96	Ta.5522.2.S1_a_at	CA699425	-	-	1e+0	At2g13150	transcription factor	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.96	Ta.6666.2.S1_at	CA640317	-	-	5e-12	At3g49420	Got1-like family protein	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.96	TaAffx.105929.1.S1_at	BJ226774	-	-	4e+0	At5g19875	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.96	TaAffx.32308.1.S1_at	CA597142	-	-	1e+0	At2g19670	PRMT1A (PROTEIN ARGININE METHYLTRANSFERASE 1A)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.9	99.6	GSM314275	tissue type: pistil, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
14.8	99.5	GSM314277	tissue type: pistil, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
13.7	99.5	GSM314276	tissue type: pistil, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
5.9	98.0	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.5	95.4	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.0	94.3	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
2.7	93.3	GSM314279	tissue type: anthers, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
2.5	92.5	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.4	92.0	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
2.3	91.5	GSM343685	Wheat var. Kennedy_control_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum

Inter-species module comparison

A co-expression module including the soybean gene, PsAffx.psHA008iG09r_s_at, orthologous to the query gene, Ta.6666.3.S1_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	PsAffx.psHA008iG09r_s_at	At3g03180	-	-	6e-1	At5g48530	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	80.7	PsAffx.C22000090_at	At3g03180	-	-	3e-2	At5g55690	MADS-box protein (AGL47)	O.I.	H.G.	S.X.	Please select
0.50	71.7	PsAffx.psMA013xP16f_at	At3g03180	-	-	3e-1	At2g30560	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.50	71.7	PsAffx.C338000008_at	At3g03180	-	-	3e+0	At5g58540	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.46	65.5	PsAffx.CL1570Contig1_at	At3g03180	-	-	5e-1	At3g24830	60S ribosomal protein L13A (RPL13aB)	O.I.	H.G.	S.X.	Please select
0.27	35.7	PsAffx.CL860Contig1_at	At3g03180	-	-	8e-2	At2g40510	40S ribosomal protein S26 (RPS26A)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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