Co-expression analysis

Gene ID Ta.6652.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g29900: CARB (CARBAMOYL PHOSPHATE SYNTHETASE B) (HF=3e-6)
Module size 16 genes
NF 0.25
%ile 41.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9799.60.98Ta.6652.1.S1_atCK160364--3e-6At1g29900CARB (CARBAMOYL PHOSPHATE SYNTHETASE B)O.I.H.G.S.X.
0.4362.20.98Ta.6642.2.S1_atBJ228298--4e+0At5g64342CPuORF39 (Conserved peptide upstream open reading frame 39)O.I.H.G.S.X.
0.3651.90.98TaAffx.131737.1.A1_atBJ241423--6e-1At4g31810enoyl-CoA hydratase/isomerase family proteinO.I.H.G.S.X.
0.3244.40.98Ta.2358.3.S1_x_atCA627906--2e+0At1g15385unknown proteinO.I.H.G.S.X.
0.3040.90.98Ta.2841.1.S1_s_atCK171594--2e-2At4g20980eukaryotic translation initiation factor 3 subunit 7, putative / eIF-3 zeta, putative / eIF3d, putativeO.I.H.G.S.X.
0.2939.20.98Ta.22845.1.S1_atBJ215922tat binding protein-7e-54At1g09100RPT5B (26S proteasome AAA-ATPase subunit RPT5B)O.I.H.G.S.X.
0.2735.60.98Ta.30760.1.A1_x_atCK198315--3e+1At4g24910unknown proteinO.I.H.G.S.X.
0.2633.60.98Ta.6642.1.S1_a_atBJ272560--1e-18At3g61760ADL1B (ARABIDOPSIS DYNAMIN-LIKE 1B)O.I.H.G.S.X.
0.2125.50.98Ta.12540.1.S1_atBJ241556--1e-3At3g56150EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C)O.I.H.G.S.X.
0.2125.50.99Ta.1866.3.S1_atCA662433--4e-3At1g12920ERF1-2 (EUKARYOTIC RELEASE FACTOR 1-2)O.I.H.G.S.X.
0.2024.00.99Ta.12870.1.S1_atBJ322687--8e-52At1g0448060S ribosomal protein L23 (RPL23A)O.I.H.G.S.X.
0.1922.40.99Ta.21547.1.S1_atCK165976--2e-3At1g14980CPN10 (CHAPERONIN 10)O.I.H.G.S.X.
0.1922.40.99Ta.21374.2.S1_atCK208435--8e-66At5g58290RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3)O.I.H.G.S.X.
0.1922.40.98Ta.1406.1.S1_a_atCK168374--2e-10At1g07140SIRANBPO.I.H.G.S.X.
0.1415.80.98Ta.659.5.S1_atCD878955--0At1g07920elongation factor 1-alpha / EF-1-alphaO.I.H.G.S.X.
0.1314.60.98Ta.23012.1.S1_atAJ610851--7e-20At1g20200EMB2719 (EMBRYO DEFECTIVE 2719)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.798.9GSM314284tissue type: 22 DAP embryo - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
8.498.9GSM298072Crown tissue of Paragon at 3 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
8.398.8GSM314285tissue type: 22 DAP embryo - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
7.898.7GSM314286tissue type: 22 DAP embryo - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
5.998.0GSM298071Crown tissue of Paragon at 3 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.697.8GSM139927Anther tetrads rep3GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
5.197.5GSM298076Crown tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.697.0GSM298075Crown tissue of Paragon at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.596.9GSM298074Crown tissue of Paragon at 5 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.795.8GSM139925Anther tetrads rep1GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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