Co-expression analysis

Gene ID	Ta.6644.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g13890: SNAP30 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 30) (HF=4e-1)
Module size	27 genes
NF	0.21
%ile	36.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.96	99.3	0.93	Ta.6644.1.A1_at	BJ219316	-	-	4e-1	At1g13890	SNAP30 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 30)	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.94	Ta.28853.1.S1_x_at	CK195774	-	-	2e+0	At4g11880	AGL14 (agamous-like 14)	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.96	Ta.28044.2.A1_at	BJ307802	-	-	4e+0	At3g60286	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.96	Ta.4232.1.S1_s_at	CK169440	-	-	5e-5	At2g32080	PUR ALPHA-1	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.95	Ta.24720.1.S1_at	BJ283856	-	-	2e-4	At5g04280	glycine-rich RNA-binding protein	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.94	Ta.28215.1.A1_at	CA663503	-	-	6e+0	At5g16920	-	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.95	TaAffx.111403.1.S1_at	CA641571	-	-	8e-1	At3g55646	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.97	Ta.28393.3.S1_x_at	CD892318	-	-	4e-21	At3g20050	ATTCP-1	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.96	Ta.5749.2.S1_x_at	BJ226539	-	-	4e+0	At5g42200	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.95	Ta.24704.2.A1_x_at	BJ319436	-	-	3e-4	At2g21790	RNR1 (RIBONUCLEOTIDE REDUCTASE 1)	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.96	Ta.8724.1.S1_at	BJ264107	-	-	8e-1	At5g55670	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.95	Ta.4970.1.S1_at	BJ269777	-	-	1e+0	At5g62750	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.94	Ta.9705.1.S1_at	CK152157	-	-	2e-1	At1g04130	tetratricopeptide repeat (TPR)-containing protein	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.94	Ta.3487.1.S1_a_at	AL825994	-	-	5e-11	At1g20220	nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.18	21.0	0.96	Ta.6730.1.A1_at	BJ236439	-	-	2e+0	At4g24250	MLO13 (MILDEW RESISTANCE LOCUS O 13)	O.I.	H.G.	S.X.	Please select
0.18	21.0	0.96	Ta.30645.1.S1_at	CK196252	-	-	3e-3	At1g72080	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.95	Ta.4891.1.A1_at	CK209693	-	-	7e+0	At3g59455	-	O.I.	H.G.	S.X.	Please select
0.16	18.2	0.96	TaAffx.37243.1.S1_at	BJ297724	-	-	4e-1	At1g73820	Ssu72-like family protein	O.I.	H.G.	S.X.	Please select
0.16	18.2	0.96	Ta.5411.2.A1_at	CK200725	-	-	2e+0	At5g60290	unknown protein	O.I.	H.G.	S.X.	Please select
0.14	15.8	0.96	TaAffx.113963.1.S1_at	BJ219694	-	-	1e-3	At1g31870	unknown protein	O.I.	H.G.	S.X.	Please select
0.14	15.8	0.96	Ta.2918.1.A1_at	CK209827	-	-	5e+0	At3g46260	protein kinase-related	O.I.	H.G.	S.X.	Please select
0.14	15.8	0.97	Ta.10437.1.A1_at	BJ251913	-	-	1e+0	At5g39540	-	O.I.	H.G.	S.X.	Please select
0.13	14.6	0.96	Ta.7323.1.A1_at	CD921412	-	-	5e-39	At5g25150	TAF5 (TBP-ASSOCIATED FACTOR 5)	O.I.	H.G.	S.X.	Please select
0.11	12.4	0.94	Ta.26000.1.A1_at	CD454520	-	-	6e+0	At5g03220	transcriptional co-activator-related	O.I.	H.G.	S.X.	Please select
0.11	12.4	0.97	Ta.11680.1.S1_at	BQ170583	-	-	5e-1	At3g50880	HhH-GPD base excision DNA repair family protein	O.I.	H.G.	S.X.	Please select
0.11	12.4	0.96	Ta.13305.1.S1_at	CK205870	-	-	2e+0	At1g75840	ARAC5 (RAC-LIKE GTP BINDING PROTEIN 5)	O.I.	H.G.	S.X.	Please select
0.09	10.4	0.96	Ta.25692.1.S1_at	CD454209	-	-	2e-1	At3g01610	CDC48C	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.5	99.1	GSM314279	tissue type: anthers, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
7.8	98.7	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
7.2	98.5	GSM139926	Anther tetrads rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
6.2	98.1	GSM139930	Anther immature pollen rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
5.6	97.8	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.4	96.8	GSM139931	Anther maturea nthers rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.0	96.3	GSM314280	tissue type: anthers, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
4.0	96.3	GSM139914	Anther pre-meiosis rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.7	95.8	GSM139932	Anther mature anthers rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.3	95.0	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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