Co-expression analysis

Gene ID	Ta.6587.2.S1_a_at
Gene name
Homology with Arabidopsis	Similar to At2g40100: LHCB4.3 (light harvesting complex PSII) (HF=3e-1)
Module size	6 genes
NF	0.69
%ile	92.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	82.0	0.97	Ta.6587.2.S1_a_at	CF133308	-	-	3e-1	At2g40100	LHCB4.3 (light harvesting complex PSII)	O.I.	H.G.	S.X.	Please select
0.83	93.4	0.97	Ta.10305.1.A1_at	BE516999	-	-	6e+0	At5g45775	60S ribosomal protein L11 (RPL11D)	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.97	Ta.27860.2.S1_a_at	CK209107	-	-	3e-1	At4g06599	ubiquitin family protein	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.97	Ta.1689.1.S1_at	BE443816	-	-	1e+0	At4g04620	ATG8B (autophagy 8b)	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.97	Ta.11046.1.A1_at	BQ168437	-	-	8e-1	At5g08190	NF-YB12 (NUCLEAR FACTOR Y, SUBUNIT B12)	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.97	Ta.5602.2.S1_at	CA673690	-	-	2e-1	At1g25682	cell cycle control protein-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.8	98.7	GSM139932	Anther mature anthers rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
6.4	98.2	GSM139933	Anther mature anthers rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
6.1	98.1	GSM139931	Anther maturea nthers rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.0	96.3	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.0	96.3	GSM324495	Si+ B+ rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.8	96.0	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.7	95.8	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.6	95.6	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.5	95.4	GSM324486	Si- B- rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.5	95.4	GSM111248	genotype F87 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps

Inter-species module comparison

A co-expression module including the barley gene, Contig6656_at, orthologous to the query gene, Ta.6587.2.S1_a_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	Contig6656_at	At2g40100	-	-	2e+0	At1g66560	WRKY64	O.I.	H.G.	S.X.	Please select
0.56	74.3	HI05P18u_s_at	At2g40100	-	-	4e+0	At3g50695	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	Contig20343_at	At2g40100	-	-	3e-1	At2g20805	-	O.I.	H.G.	S.X.	Please select
0.44	58.9	Contig3680_s_at	At2g40100	-	-	3e-13	At4g24920	protein transport protein SEC61 gamma subunit, putative	O.I.	H.G.	S.X.	Please select
0.38	49.5	HA31E10r_s_at	At2g40100	-	-	1e+0	At4g15620	integral membrane family protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	Contig11475_at	At2g40100	-	-	1e-59	At3g11540	SPY (SPINDLY)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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