CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.6587.2.S1_a_at

Gene name
Homology with Arabidopsis Similar to At2g40100: LHCB4.3 (light harvesting complex PSII) (HF=3e-1)

Module size 6 genes

NF 0.69

%ile 92.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 82.0 0.97 Ta.6587.2.S1_a_at CF133308 - - 3e-1 At2g40100 LHCB4.3 (light harvesting complex PSII) O.I. H.G. S.X.
0.83 93.4 0.97 Ta.10305.1.A1_at BE516999 - - 6e+0 At5g45775 60S ribosomal protein L11 (RPL11D) O.I. H.G. S.X.
0.77 90.8 0.97 Ta.27860.2.S1_a_at CK209107 - - 3e-1 At4g06599 ubiquitin family protein O.I. H.G. S.X.
0.77 90.8 0.97 Ta.1689.1.S1_at BE443816 - - 1e+0 At4g04620 ATG8B (autophagy 8b) O.I. H.G. S.X.
0.60 81.0 0.97 Ta.11046.1.A1_at BQ168437 - - 8e-1 At5g08190 NF-YB12 (NUCLEAR FACTOR Y, SUBUNIT B12) O.I. H.G. S.X.
0.40 58.4 0.97 Ta.5602.2.S1_at CA673690 - - 2e-1 At1g25682 cell cycle control protein-related O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.8 98.7 GSM139932 Anther mature anthers rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
6.4 98.2 GSM139933 Anther mature anthers rep3 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
6.1 98.1 GSM139931 Anther maturea nthers rep1 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.0 96.3 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.0 96.3 GSM324495 Si+ B+ rep3 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.8 96.0 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.7 95.8 GSM250897 TcLr1_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.6 95.6 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.5 95.4 GSM324486 Si- B- rep3 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.5 95.4 GSM111248 genotype F87 developing seed at 5 days after anthesis, biological rep1 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At2g40100, orthologous to the query gene, Ta.6587.2.S1_a_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At2g40100 818599 LHCB4.3 (light harvesting complex PSII) Lhcb4:3 protein (Lhcb4.3, light harvesting complex of photosystem II O.I. H.G. S.X.
0.40 50.8 At5g58310 835943 MES18 (METHYL ESTERASE 18) Encodes a protein shown to have methyl IAA esterase activity in vitro. This protein does not act on methyl JA, MeSA, MeGA4, or MEGA9 in vitro. O.I. H.G. S.X.
0.29 30.3 At1g32080 840100 membrane protein, putative F:unknown;P:unknown;C:chloroplast, chloroplast inner membrane, membrane, chloroplast envelope;BOFPA O.I. H.G. S.X.
0.29 30.3 At5g36700 833635 PGLP1 (2-PHOSPHOGLYCOLATE PHOSPHATASE 1) F:phosphoglycolate phosphatase activity;P:metabolic process;C:chloroplast stroma, chloroplast;BOMFAP O.I. H.G. S.X.
0.05 1.1 At4g29590 829080 methyltransferase F:methyltransferase activity;P:metabolic process;C:chloroplast;BOPAF O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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