Co-expression analysis

Gene ID	Ta.6561.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g63250: HMT2 (HOMOCYSTEINE METHYLTRANSFERASE 2) (HF=8e-1)
Module size	6 genes
NF	0.66
%ile	90.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.98	Ta.6561.1.S1_at	CD905008	-	-	8e-1	At3g63250	HMT2 (HOMOCYSTEINE METHYLTRANSFERASE 2)	O.I.	H.G.	S.X.	Please select
0.83	93.4	0.97	Ta.6561.2.S1_at	CD901431	-	-	6e-1	At3g63250	HMT2 (HOMOCYSTEINE METHYLTRANSFERASE 2)	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.97	Ta.1316.1.S1_a_at	BQ579487	-	-	1e+1	At5g33355	-	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.98	Ta.1316.1.S1_x_at	BQ579487	-	-	1e+1	At5g33355	-	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.97	TaAffx.38087.1.A1_at	BJ250956	-	-	2e+0	At1g33840	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.97	Ta.9527.1.S1_x_at	BJ254990	-	-	1e+1	At5g44420	PDF1.2	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
22.8	99.8	GSM314269	tissue type: immature inflorescence - rep1	GSE12508	Transcription patterns during wheat development
13.9	99.5	GSM314271	tissue type: immature inflorescence - rep3	GSE12508	Transcription patterns during wheat development
11.9	99.4	GSM314270	tissue type: immature inflorescence - rep2	GSE12508	Transcription patterns during wheat development
3.0	94.3	GSM138163	genotype E5 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.9	94.0	GSM298083	Crown tissue of Solstice at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
2.9	94.0	GSM111231	genotype B33 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.5	92.5	GSM138172	genotype DH95 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.5	92.5	GSM138171	genotype C31 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.4	92.0	GSM111247	genotype H10 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.4	92.0	GSM139930	Anther immature pollen rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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