Co-expression analysis

Gene ID	Ta.6549.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g02405: proline-rich family protein (HF=9e-3)
Module size	20 genes
NF	0.30
%ile	48.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.3	0.95	Ta.6549.1.S1_at	CA677504	-	-	9e-3	At1g02405	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.97	Ta.5958.1.S1_at	BT008977.1	-	-	3e-3	At5g21090	leucine-rich repeat protein, putative	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.96	Ta.28571.1.S1_s_at	CA639817	-	-	8e-5	At3g47810	MAG1 (MAIGO 1)	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.96	Ta.13722.1.S1_at	BJ239650	-	-	6e-13	At3g57870	SCE1 (SUMO CONJUGATION ENZYME 1)	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.96	Ta.30499.1.S1_at	AB042194.1	TaWIN2	-	2e-19	At5g16050	GRF5 (GENERAL REGULATORY FACTOR 5)	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.96	Ta.30414.1.S1_at	CA606112	-	-	4e-21	At4g27880	seven in absentia (SINA) family protein	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.96	Ta.3559.2.S1_a_at	CA697904	-	-	5e-12	At3g02600	LPP3 (LIPID PHOSPHATE PHOSPHATASE 3)	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.97	Ta.14547.1.S1_at	BJ317926	-	-	6e-4	At1g26665	-	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.97	Ta.1079.2.S1_a_at	BJ316978	-	-	5e-12	At4g21110	G10 family protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.96	Ta.3716.1.S1_at	CA635368	RUB1-conjugating enzyme	-	2e-12	At2g18600	RUB1-conjugating enzyme, putative	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.96	Ta.906.3.S1_at	CA604628	-	-	6e-3	At1g16180	TMS membrane family protein / tumour differentially expressed (TDE) family protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.96	Ta.5057.1.S1_x_at	X89826.1	profilin	-	2e-8	At4g29350	PFN2 (PROFILIN 2)	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.96	Ta.4791.2.S1_at	BJ271728	-	-	2e-12	At5g51280	DEAD-box protein abstrakt, putative	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.96	TaAffx.99201.1.S1_at	CA685457	-	-	5e-8	At4g18230	-	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.96	AFFX-Tae-r2-Bs-thr-M_s_at	AFFX-Tae-r2-Bs-thr-M	-	-			-	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.96	Ta.24358.1.S1_s_at	CA611190	-	-	3e+0	At1g22410	2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.96	Ta.28260.1.S1_a_at	CA641807	-	-	2e+0	At5g47220	ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2)	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.97	Ta.1810.1.S1_at	BE405207	-	-	2e+0	At3g01020	ISU2 (ISCU-LIKE 2)	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.97	Ta.10286.1.S1_a_at	CA644098	-	-	1e+0	At2g20613	unknown protein	O.I.	H.G.	S.X.	Please select
0.14	15.8	0.97	Ta.2505.1.A1_at	BJ261362	-	-	2e-33	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.4	95.2	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.2	94.8	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.9	94.0	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.7	93.3	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.6	92.9	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
2.4	92.0	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.4	92.0	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.3	91.5	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
2.2	91.0	GSM298091	Leaf tissue of Solstice at 9 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
2.1	90.3	GSM314276	tissue type: pistil, before anthesis - rep2	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage