Co-expression analysis

Gene ID	Ta.6506.1.S1_at
Gene name	p60 katanin
Homology with Arabidopsis	Similar to At3g19740: ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding (HF=2e-25)
Module size	30 genes
NF	0.42
%ile	67.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.84	93.6	0.96	Ta.6506.1.S1_at	BJ272687	p60 katanin	-	2e-25	At3g19740	ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding	O.I.	H.G.	S.X.	Please select
0.69	86.9	0.96	Ta.5749.2.S1_x_at	BJ226539	-	-	4e+0	At5g42200	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.65	83.9	0.97	TaAffx.56073.1.S1_at	CA657732	-	-	4e+0	At2g29330	TRI (tropinone reductase)	O.I.	H.G.	S.X.	Please select
0.61	82.0	0.96	Ta.13305.1.S1_at	CK205870	-	-	2e+0	At1g75840	ARAC5 (RAC-LIKE GTP BINDING PROTEIN 5)	O.I.	H.G.	S.X.	Please select
0.58	79.2	0.96	Ta.4407.1.A1_at	CK154939	-	-	6e-10	At1g11240	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.97	Ta.22164.1.S1_at	CA651370	-	-	1e-1	At1g70750	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.97	Ta.9787.1.S1_a_at	CK171633	-	-	6e-65	At1g80410	EMB2753 (EMBRYO DEFECTIVE 2753)	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.98	Ta.6563.1.A1_x_at	BJ263201	-	-	3e-8	At2g06990	HEN2 (hua enhancer 2)	O.I.	H.G.	S.X.	Please select
0.49	69.7	0.96	Ta.12189.1.A1_at	BQ171777	-	-	1e+0	At3g28560	-	O.I.	H.G.	S.X.	Please select
0.48	69.0	0.97	Ta.18565.1.S1_s_at	BQ801544	-	-	7e-2	At1g37010	-	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.97	Ta.28393.3.S1_x_at	CD892318	-	-	4e-21	At3g20050	ATTCP-1	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.96	Ta.6940.1.S1_at	BJ312788	-	-	2e-4	At4g17760	damaged DNA binding / exodeoxyribonuclease III	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.98	Ta.25628.1.S1_x_at	CA638117	-	-	5e-5	At5g61770	PPAN (PETER PAN-LIKE PROTEIN)	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.97	Ta.8001.1.A1_at	BQ161106	-	-	2e-1	At4g32540	YUC1 (YUCCA 1)	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.97	Ta.7343.1.S1_at	CD939192	-	-	7e-1	At2g19680	mitochondrial ATP synthase g subunit family protein	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.97	TaAffx.39377.1.A1_at	BG907838	-	-	7e+0	At5g50480	NF-YC6 (NUCLEAR FACTOR Y, SUBUNIT C6)	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.97	Ta.6563.1.A1_at	BJ263201	-	-	3e-8	At2g06990	HEN2 (hua enhancer 2)	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.98	Ta.28393.2.S1_at	CK195651	-	-	2e-27	At3g20050	ATTCP-1	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.97	Ta.28393.2.S1_x_at	CK195651	-	-	2e-27	At3g20050	ATTCP-1	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.97	Ta.7191.1.A1_s_at	CD878624	-	-	5e+0	At5g63650	SNRK2.5 (SNF1-RELATED PROTEIN KINASE 2.5)	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.96	Ta.2915.1.S1_a_at	BJ214417	-	-	4e+0	At5g48890	transcription factor	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.96	TaAffx.11835.1.A1_at	BJ321178	-	-	3e-1	At4g26940	galactosyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.96	Ta.4017.1.S1_at	BJ262442	-	-	1e-1	At4g37235	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.97	Ta.4166.2.A1_at	BJ265813	-	-	5e-9	At3g44600	CYP71 (CYCLOPHILIN71)	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.96	Ta.4965.3.S1_at	CK201082	-	-	5e+0	At3g59950	autophagy 4b (APG4b)	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.97	Ta.4965.1.S1_x_at	CD894408	-	-	6e-2	At3g03405	-	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.97	Ta.7537.1.S1_at	CK199057	-	-	7e-5	At2g16940	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.97	Ta.3396.1.A1_at	BJ211165	-	-	1e+1	At5g43430	ETFBETA	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.97	Ta.7503.1.S1_at	BJ296010	-	-	5e-2	At2g16015	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.98	Ta.23800.1.S1_at	CA647644	-	-	3e-4	At1g05910	cell division cycle protein 48-related / CDC48-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.3	99.4	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
4.6	97.0	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development
4.4	96.8	GSM314255	tissue type: germinating seed, root - rep2	GSE12508	Transcription patterns during wheat development
4.3	96.7	GSM139914	Anther pre-meiosis rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.2	94.8	GSM139917	Anther leptotene-pachytene rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.2	94.8	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development
3.1	94.5	GSM314252	tissue type: germinating seed, coleoptile - rep2	GSE12508	Transcription patterns during wheat development
2.9	94.0	GSM139916	Anther leptotene-pachytene rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.8	93.6	GSM314253	tissue type: germinating seed, coleoptile - rep3	GSE12508	Transcription patterns during wheat development
2.8	93.6	GSM314251	tissue type: germinating seed, coleoptile - rep1	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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