Co-expression analysis

Gene ID	Ta.645.1.S1_a_at
Gene name
Homology with Arabidopsis	Similar to At2g28550: RAP2.7 (RELATED TO AP2.7) (HF=9e+0)
Module size	12 genes
NF	0.73
%ile	94.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	82.0	0.98	Ta.645.1.S1_a_at	CK212406	-	-	9e+0	At2g28550	RAP2.7 (RELATED TO AP2.7)	O.I.	H.G.	S.X.	Please select
0.83	93.4	0.98	Ta.1147.3.S1_x_at	BG908516	-	-	2e+1	At5g41420	unknown protein	O.I.	H.G.	S.X.	Please select
0.81	92.4	0.98	Ta.1147.2.S1_a_at	CA599073	-	-	8e+0	At4g18692	unknown protein	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.98	Ta.9368.1.S1_a_at	CD861507	-	-	1e-1	At2g27390	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.75	89.8	0.98	Ta.1147.1.A1_x_at	BG908398	-	-	3e+0	At5g55720	pectate lyase family protein	O.I.	H.G.	S.X.	Please select
0.74	89.4	0.98	Ta.1147.1.A1_at	BG908398	-	-	3e+0	At5g55720	pectate lyase family protein	O.I.	H.G.	S.X.	Please select
0.74	89.4	0.99	Ta.1147.2.S1_x_at	CA599073	-	-	8e+0	At4g18692	unknown protein	O.I.	H.G.	S.X.	Please select
0.72	88.3	0.98	Ta.1147.3.S1_at	BG908516	-	-	2e+1	At5g41420	unknown protein	O.I.	H.G.	S.X.	Please select
0.69	86.9	0.98	Ta.2737.1.S1_at	CK211424	-	-	9e+0	At5g23090	NF-YB13 (NUCLEAR FACTOR Y, SUBUNIT B13)	O.I.	H.G.	S.X.	Please select
0.61	82.0	0.98	Ta.12065.1.S1_at	BQ171511	-	-	2e+0	At3g45000	VPS24.2	O.I.	H.G.	S.X.	Please select
0.57	79.2	0.98	Ta.23277.1.S1_a_at	CD862941	-	-	2e+0	At1g49570	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.56	78.6	0.98	Ta.4913.1.S1_at	BQ171872	-	-	8e-10	At5g54290	cytochrome c biogenesis protein family	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.9	97.3	GSM343682	Wheat var. Kennedy_control_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
4.6	97.0	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
4.3	96.7	GSM343685	Wheat var. Kennedy_control_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
4.1	96.4	GSM343678	Wheat var. Kennedy_control_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
4.0	96.3	GSM324486	Si- B- rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.8	96.0	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.8	96.0	GSM343687	Wheat var. Kennedy_Fp inoculated_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.8	96.0	GSM324492	Si+ B- rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.7	95.8	GSM324485	Si- B- rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.5	95.4	GSM324491	Si+ B- rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage