Co-expression analysis

Gene ID	Ta.6428.1.S1_s_at
Gene name
Homology with Arabidopsis	Similar to At5g47620: heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative (HF=2e-5)
Module size	8 genes
NF	0.52
%ile	78.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	88.0	0.98	Ta.6428.1.S1_s_at	BG608133	-	-	2e-5	At5g47620	heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative	O.I.	H.G.	S.X.	Please select
0.71	88.0	0.98	Ta.2319.2.S1_a_at	CA671429	-	-	8e+0	At4g08270	-	O.I.	H.G.	S.X.	Please select
0.63	83.1	0.98	Ta.22513.1.S1_at	CA640463	-	-	5e-5	At1g22910	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.56	78.6	0.98	Ta.7382.1.S1_a_at	CD862833	-	-	1e+0	At3g13224	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.98	Ta.6406.1.S1_at	BJ303896	-	-	2e-5	At1g29370	kinase-related	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.98	Ta.13761.1.S1_s_at	AL820456	-	-	2e+0	At2g25052	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.98	Ta.6255.1.S1_at	CK167744	-	-	3e-16	At5g61970	signal recognition particle-related / SRP-related	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.98	Ta.735.1.S1_at	CK215595	-	-	2e-66	At3g62120	tRNA synthetase class II (G, H, P and S) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.6	99.6	GSM315202	target strand labeled: Sense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
5.7	97.9	GSM298076	Crown tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.0	97.4	GSM298075	Crown tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.8	97.2	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
4.8	97.2	GSM314269	tissue type: immature inflorescence - rep1	GSE12508	Transcription patterns during wheat development
4.3	96.7	GSM343682	Wheat var. Kennedy_control_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.7	95.8	GSM314270	tissue type: immature inflorescence - rep2	GSE12508	Transcription patterns during wheat development
3.6	95.6	GSM343678	Wheat var. Kennedy_control_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.6	95.6	GSM343685	Wheat var. Kennedy_control_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.5	95.4	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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