Co-expression analysis

Gene ID Ta.6394.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At5g37020: ARF8 (AUXIN RESPONSE FACTOR 8) (HF=7e-15)
Module size 6 genes
NF 0.33
%ile 53.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6081.00.97Ta.6394.1.A1_atBJ309507--7e-15At5g37020ARF8 (AUXIN RESPONSE FACTOR 8)O.I.H.G.S.X.
0.7389.10.97Ta.8839.1.S1_atBJ273875--3e-6At3g26790FUS3 (FUSCA 3)O.I.H.G.S.X.
0.4362.20.97Ta.2864.2.S1_x_atCD894558--1e-6At5g36890BGLU42 (BETA GLUCOSIDASE 42)O.I.H.G.S.X.
0.2329.00.97TaAffx.18131.1.S1_atCA606191--4e-2At1g51620protein kinase family proteinO.I.H.G.S.X.
0.2125.50.97Ta.8901.1.A1_s_atBJ274060--2e+0At5g45440disease resistance protein-relatedO.I.H.G.S.X.
0.1517.10.97Ta.2864.1.S1_atCK208206--5e-7At5g36890BGLU42 (BETA GLUCOSIDASE 42)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.298.5GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.697.0GSM314269tissue type: immature inflorescence - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
4.496.8GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.396.7GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.296.6GSM111233genotype H8 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
3.996.1GSM139914Anther pre-meiosis rep2GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
3.896.0GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.495.2GSM314271tissue type: immature inflorescence - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
3.395.0GSM314270tissue type: immature inflorescence - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
3.194.5GSM138210genotype B65 developing seed at 5 days after anthesis, biological rep1GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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