Co-expression analysis

Gene ID	Ta.6161.3.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At5g50870: UBC27 (ubiquitin-conjugating enzyme 27) (HF=1e-12)
Module size	6 genes
NF	0.70
%ile	92.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	74.9	0.97	Ta.6161.3.S1_x_at	CA640525	-	-	1e-12	At5g50870	UBC27 (ubiquitin-conjugating enzyme 27)	O.I.	H.G.	S.X.	Please select
0.91	98.2	0.97	Ta.5516.3.S1_a_at	CA652702	-	-	4e-17	At4g23470	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.83	93.4	0.97	Ta.5516.3.S1_x_at	CA652702	-	-	4e-17	At4g23470	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.96	Ta.5516.2.S1_x_at	CA703744	-	-	3e-13	At4g23470	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.63	83.1	0.96	Ta.22895.1.S1_at	BJ319923	-	-	8e-1	At1g60730	aldo/keto reductase family protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.97	Ta.21119.2.S1_at	CA647503	-	-	4e-3	At2g47970	NPL4 family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.0	98.5	GSM314252	tissue type: germinating seed, coleoptile - rep2	GSE12508	Transcription patterns during wheat development
6.4	98.2	GSM314285	tissue type: 22 DAP embryo - rep2	GSE12508	Transcription patterns during wheat development
5.6	97.8	GSM314286	tissue type: 22 DAP embryo - rep3	GSE12508	Transcription patterns during wheat development
5.4	97.7	GSM314258	tissue type: germinating seed, embryo - rep2	GSE12508	Transcription patterns during wheat development
4.7	97.1	GSM314253	tissue type: germinating seed, coleoptile - rep3	GSE12508	Transcription patterns during wheat development
4.2	96.6	GSM314259	tissue type: germinating seed, embryo - rep3	GSE12508	Transcription patterns during wheat development
4.1	96.4	GSM314251	tissue type: germinating seed, coleoptile - rep1	GSE12508	Transcription patterns during wheat development
3.1	94.5	GSM314287	tissue type: 22 DAP endosperm - rep1	GSE12508	Transcription patterns during wheat development
3.1	94.5	GSM138147	genotype G13 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.0	94.3	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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