Co-expression analysis

Gene ID	Ta.6113.2.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At2g46810: basic helix-loop-helix (bHLH) family protein (HF=2e+0)
Module size	6 genes
NF	0.71
%ile	93.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	92.2	0.96	Ta.6113.2.S1_x_at	AJ611253	-	-	2e+0	At2g46810	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.83	93.4	0.96	Ta.6113.1.S1_at	CA668966	-	-	3e+0	At5g22300	NIT4 (NITRILASE 4)	O.I.	H.G.	S.X.	Please select
0.71	88.0	0.97	Ta.6113.1.S1_a_at	CA668966	-	-	3e+0	At5g22300	NIT4 (NITRILASE 4)	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.96	Ta.6101.1.S1_at	CD937323	-	-	2e-10	At3g48890	ATMP2	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.96	Ta.3922.1.S1_at	CD454673	-	-	3e-6	At5g22300	NIT4 (NITRILASE 4)	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.97	Ta.24202.1.S1_s_at	CA693707	-	-	7e+0	At4g33640	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
26.7	99.8	GSM314289	tissue type: 22 DAP endosperm - rep3	GSE12508	Transcription patterns during wheat development
21.8	99.8	GSM314288	tissue type: 22 DAP endosperm - rep2	GSE12508	Transcription patterns during wheat development
19.4	99.7	GSM314287	tissue type: 22 DAP endosperm - rep1	GSE12508	Transcription patterns during wheat development
8.8	98.9	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
6.2	98.1	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
2.9	94.0	GSM143515	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
2.8	93.6	GSM138191	genotype D39 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.8	93.6	GSM250914	Tc_7dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.8	93.6	GSM143517	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
2.7	93.3	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

A co-expression module including the grape gene, 1622423_at, orthologous to the query gene, Ta.6113.2.S1_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	1622423_at	At2g46810	similar to Bifunctional nitrilase/nitrile hydratase NIT4B	-	1e-13	At5g22300	NIT4 (NITRILASE 4)	O.I.	H.G.	S.X.	Please select
0.60	81.9	1614373_at	At2g46810	hypothetical protein LOC100249178	-	2e-5	At2g25605	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	81.9	1617949_at	At2g46810	hypothetical protein LOC100241470	-	1e-3	At3g09735	DNA-binding S1FA family protein	O.I.	H.G.	S.X.	Please select
0.46	66.5	1615857_s_at	At2g46810	hypothetical protein LOC100267827	-	2e-53	At1g01820	PEX11C (PEROXIN 11C)	O.I.	H.G.	S.X.	Please select
0.27	34.0	1614796_at	At2g46810	hypothetical protein LOC100250729	-	4e-19	At1g42960	-	O.I.	H.G.	S.X.	Please select
0.25	30.5	1615820_at	At2g46810	hypothetical protein LOC100263593	-	1e-6	At3g07270	GTP cyclohydrolase I	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

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