Co-expression analysis

Gene ID	Ta.6113.2.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At2g46810: basic helix-loop-helix (bHLH) family protein (HF=2e+0)
Module size	6 genes
NF	0.71
%ile	93.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	92.2	0.96	Ta.6113.2.S1_x_at	AJ611253	-	-	2e+0	At2g46810	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.83	93.4	0.96	Ta.6113.1.S1_at	CA668966	-	-	3e+0	At5g22300	NIT4 (NITRILASE 4)	O.I.	H.G.	S.X.	Please select
0.71	88.0	0.97	Ta.6113.1.S1_a_at	CA668966	-	-	3e+0	At5g22300	NIT4 (NITRILASE 4)	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.96	Ta.6101.1.S1_at	CD937323	-	-	2e-10	At3g48890	ATMP2	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.96	Ta.3922.1.S1_at	CD454673	-	-	3e-6	At5g22300	NIT4 (NITRILASE 4)	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.97	Ta.24202.1.S1_s_at	CA693707	-	-	7e+0	At4g33640	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
26.7	99.8	GSM314289	tissue type: 22 DAP endosperm - rep3	GSE12508	Transcription patterns during wheat development
21.8	99.8	GSM314288	tissue type: 22 DAP endosperm - rep2	GSE12508	Transcription patterns during wheat development
19.4	99.7	GSM314287	tissue type: 22 DAP endosperm - rep1	GSE12508	Transcription patterns during wheat development
8.8	98.9	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
6.2	98.1	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
2.9	94.0	GSM143515	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
2.8	93.6	GSM138191	genotype D39 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.8	93.6	GSM250914	Tc_7dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.8	93.6	GSM143517	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
2.7	93.3	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.14282.1.S1_at, orthologous to the query gene, Ta.6113.2.S1_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	PtpAffx.14282.1.S1_at	At2g46810	-	-	4e-24	At5g22300	NIT4 (NITRILASE 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	Ptp.7246.1.S1_at	At2g46810	methionine sulfoxide reductase type	-	2e-6	At4g04800	methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	PtpAffx.15326.1.A1_at	At2g46810	hypothetical protein	-	4e-39	At4g29120	6-phosphogluconate dehydrogenase NAD-binding domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.45	72.3	Ptp.2044.2.S1_a_at	At2g46810	serine/threonine protein kinase 3, CTR3	-	1e+0	At1g53650	CID8 (CTC-INTERACTING DOMAIN 8)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.8448.1.S1_at	At2g46810	hypothetical protein	-	1e-93	At3g48560	CSR1 (CHLORSULFURON/IMIDAZOLINONE RESISTANT 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	Ptp.1153.1.A1_at	At2g46810	hypothetical protein	-	1e-4	At1g79870	oxidoreductase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.39	64.6	Ptp.6178.1.S1_a_at	At2g46810	hypothetical protein	-	6e-31	At1g21065	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	Ptp.7846.1.S1_at	At2g46810	hypothetical protein	-	1e-2	At5g28610	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	PtpAffx.45182.1.A1_at	At2g46810	hypothetical protein	-	2e+0	At5g08350	GRAM domain-containing protein / ABA-responsive protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.161722.1.S1_at	At2g46810	hypothetical protein	-	2e-67	At5g65720	NFS1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	Ptp.6118.1.S1_a_at	At2g46810	hypothetical protein	-	2e-3	At2g02390	ATGSTZ1 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE ZETA 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	PtpAffx.13912.1.S1_at	At2g46810	-	-	1e-11	At2g43090	aconitase C-terminal domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.68821.1.A1_a_at	At2g46810	hypothetical protein	-	3e-8	At1g18490	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.2019.1.S1_at	At2g46810	hypothetical protein	-	2e-14	At2g14910	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.28	50.5	Ptp.6151.1.A1_at	At2g46810	hypothetical protein	-	2e-6	At5g23040	CDF1 (CELL GROWTH DEFECT FACTOR 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	PtpAffx.46613.1.S1_s_at	At2g46810	hypothetical protein	-	7e-12	At4g27390	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	PtpAffx.96594.1.S1_at	At2g46810	hypothetical protein	-	3e-5	At4g00550	DGD2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	PtpAffx.68976.1.A1_at	At2g46810	hypothetical protein	-	4e+0	At4g15000	60S ribosomal protein L27 (RPL27C)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

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