Co-expression analysis

Gene ID Ta.6113.2.S1_x_at
Gene name
Homology with ArabidopsisSimilar to At2g46810: basic helix-loop-helix (bHLH) family protein (HF=2e+0)
Module size 6 genes
NF 0.71
%ile 93.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8092.20.96Ta.6113.2.S1_x_atAJ611253--2e+0At2g46810basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.8393.40.96Ta.6113.1.S1_atCA668966--3e+0At5g22300NIT4 (NITRILASE 4)O.I.H.G.S.X.
0.7188.00.97Ta.6113.1.S1_a_atCA668966--3e+0At5g22300NIT4 (NITRILASE 4)O.I.H.G.S.X.
0.6786.30.96Ta.6101.1.S1_atCD937323--2e-10At3g48890ATMP2O.I.H.G.S.X.
0.6081.00.96Ta.3922.1.S1_atCD454673--3e-6At5g22300NIT4 (NITRILASE 4)O.I.H.G.S.X.
0.3142.70.97Ta.24202.1.S1_s_atCA693707--7e+0At4g33640unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
26.799.8GSM314289tissue type: 22 DAP endosperm - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
21.899.8GSM314288tissue type: 22 DAP endosperm - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
19.499.7GSM314287tissue type: 22 DAP endosperm - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
8.898.9GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
6.298.1GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
2.994.0GSM143515Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 1GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
2.893.6GSM138191genotype D39 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
2.893.6GSM250914Tc_7dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
2.893.6GSM143517Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
2.793.3GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os02g0635000, orthologous to the query gene, Ta.6113.2.S1_x_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6181.2Os02g0635000At2g46810-Nitrilase 13e+0At4g38680GRP2 (GLYCINE RICH PROTEIN 2)O.I.H.G.S.X.
0.5371.3Os04g0602200At2g46810-Conserved hypothetical protein3e-3At1g31410putrescine-binding periplasmic protein-relatedO.I.H.G.S.X.
0.5168.7Os05g0108000At2g46810-The start codon is not identified.4e-31At5g14460pseudouridine synthase/ transporterO.I.H.G.S.X.
0.4964.4Os02g0595100At2g46810-Glycosyl transferase, family 17 protein2e-21At1g12990glycosyl transferase family 17 proteinO.I.H.G.S.X.
0.4458.1Os02g0778200At2g46810-Isoleucyl-tRNA synthetase, class Ia family protein9e-18At5g49030OVA2 (ovule abortion 2)O.I.H.G.S.X.
0.3644.0Os03g0163300At2g46810-Glutathione reductase (Fragment)2e-8At3g54660GR (GLUTATHIONE REDUCTASE)O.I.H.G.S.X.
0.3644.0Os01g0250900At2g46810-HAD superfamily (subfamily IG) hydrolase,5'-Nucleotidase protein3e-32At5g489605' nucleotidase family proteinO.I.H.G.S.X.
0.3541.7Os02g0754700At2g46810--2e-17At3g46100ATHRS1 (HISTIDYL-TRNA SYNTHETASE 1)O.I.H.G.S.X.
0.3440.0Os03g0687200At2g46810-Hypothetical protein2e-1At1g67035unknown proteinO.I.H.G.S.X.
0.3032.7Os04g0475500At2g46810-TPR-like domain containing protein3e-2At5g09320VPS9BO.I.H.G.S.X.
0.3032.7Os11g0580800At2g46810-Bacterial sec-independent translocation proteinmttA/Hcf106 family protein6e-23At5g52440HCF106O.I.H.G.S.X.
0.2931.1Os11g0544500At2g46810-Protein of unknown function UPF0016 family protein1e-21At4g13590unknown proteinO.I.H.G.S.X.
0.2931.1Os09g0109800At2g46810-Conserved hypothetical protein2e-54At3g19490ATNHD1O.I.H.G.S.X.
0.2931.1Os07g0485400At2g46810-Asparaginyl-tRNA synthetase,chloroplast/mitochondrial precursor (EC 6.1.1.22)(Asparagine--tRNA ligase) (AsnRS)1e-25At4g17300NS1O.I.H.G.S.X.
0.2219.4Os08g0483600At2g46810-Conserved hypothetical protein4e-1At2g27470NF-YB11 (NUCLEAR FACTOR Y, SUBUNIT B11)O.I.H.G.S.X.
0.2117.9Os01g0507900At2g46810-NClpP3 (ATP-dependent Clp protease proteolyticsubunit ClpP3)3e+0At4g35820oxidoreductase, 2OG-Fe(II) oxygenase family proteinO.I.H.G.S.X.
0.1813.7Os12g0206700At2g46810-Hypothetical protein4e-1At3g11110zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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