Co-expression analysis

Gene ID Ta.6113.2.S1_x_at
Gene name
Homology with ArabidopsisSimilar to At2g46810: basic helix-loop-helix (bHLH) family protein (HF=2e+0)
Module size 6 genes
NF 0.71
%ile 93.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8092.20.96Ta.6113.2.S1_x_atAJ611253--2e+0At2g46810basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.8393.40.96Ta.6113.1.S1_atCA668966--3e+0At5g22300NIT4 (NITRILASE 4)O.I.H.G.S.X.
0.7188.00.97Ta.6113.1.S1_a_atCA668966--3e+0At5g22300NIT4 (NITRILASE 4)O.I.H.G.S.X.
0.6786.30.96Ta.6101.1.S1_atCD937323--2e-10At3g48890ATMP2O.I.H.G.S.X.
0.6081.00.96Ta.3922.1.S1_atCD454673--3e-6At5g22300NIT4 (NITRILASE 4)O.I.H.G.S.X.
0.3142.70.97Ta.24202.1.S1_s_atCA693707--7e+0At4g33640unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
26.799.8GSM314289tissue type: 22 DAP endosperm - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
21.899.8GSM314288tissue type: 22 DAP endosperm - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
19.499.7GSM314287tissue type: 22 DAP endosperm - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
8.898.9GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
6.298.1GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
2.994.0GSM143515Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 1GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
2.893.6GSM138191genotype D39 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
2.893.6GSM250914Tc_7dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
2.893.6GSM143517Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
2.793.3GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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