Co-expression analysis

Gene ID	Ta.6101.2.S1_a_at
Gene name
Homology with Arabidopsis	Similar to At3g48890: ATMP2 (HF=3e-16)
Module size	8 genes
NF	0.57
%ile	83.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	79.2	0.96	Ta.6101.2.S1_a_at	CA697971	-	-	3e-16	At3g48890	ATMP2	O.I.	H.G.	S.X.	Please select
0.70	87.2	0.96	Ta.11338.3.S1_a_at	CA647367	-	-	4e+0	At3g47200	unknown protein	O.I.	H.G.	S.X.	Please select
0.63	83.1	0.96	TaAffx.30725.1.S1_s_at	CA622632	-	-	1e+0	At1g03170	unknown protein	O.I.	H.G.	S.X.	Please select
0.63	83.1	0.96	Ta.13273.2.S1_a_at	CA661231	-	-	2e-11	At1g12760	protein binding / ubiquitin-protein ligase/ zinc ion binding	O.I.	H.G.	S.X.	Please select
0.55	76.8	0.97	Ta.11338.1.S1_at	BQ169872	-	-	3e+0	At4g08593	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.97	Ta.3239.2.A1_a_at	CA641606	-	-	4e+0	At4g09775	-	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.97	Ta.5228.2.A1_a_at	BJ283864	-	-	2e+1	At5g38050	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.97	Ta.18508.1.S1_a_at	CA652261	-	-	4e-1	At4g37470	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.4	99.3	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
6.8	98.4	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.4	97.7	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.5	96.9	GSM298064	Crown tissue of Harnesk at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.4	95.2	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.1	94.5	GSM298062	Crown tissue of Harnesk at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
2.9	94.0	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.9	94.0	GSM298059	Crown tissue of Harnesk at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
2.7	93.3	GSM298060	Crown tissue of Harnesk at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
2.6	92.9	GSM298061	Crown tissue of Harnesk at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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