Co-expression analysis

Gene ID	Ta.6101.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g48890: ATMP2 (HF=2e-10)
Module size	6 genes
NF	0.67
%ile	91.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	93.4	0.96	Ta.6101.1.S1_at	CD937323	-	-	2e-10	At3g48890	ATMP2	O.I.	H.G.	S.X.	Please select
0.83	93.4	0.96	Ta.6113.1.S1_at	CA668966	-	-	3e+0	At5g22300	NIT4 (NITRILASE 4)	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.96	Ta.6113.2.S1_x_at	AJ611253	-	-	2e+0	At2g46810	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.57	79.2	0.97	Ta.6113.1.S1_a_at	CA668966	-	-	3e+0	At5g22300	NIT4 (NITRILASE 4)	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.97	Ta.6101.2.S1_a_at	CA697971	-	-	3e-16	At3g48890	ATMP2	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.97	Ta.24202.1.S1_s_at	CA693707	-	-	7e+0	At4g33640	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
26.7	99.8	GSM314289	tissue type: 22 DAP endosperm - rep3	GSE12508	Transcription patterns during wheat development
21.8	99.8	GSM314288	tissue type: 22 DAP endosperm - rep2	GSE12508	Transcription patterns during wheat development
19.4	99.7	GSM314287	tissue type: 22 DAP endosperm - rep1	GSE12508	Transcription patterns during wheat development
8.7	98.9	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
6.2	98.1	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.3	95.0	GSM143517	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.3	95.0	GSM143502	Thatcher_Lr34 (resistant), rust inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.3	95.0	GSM143506	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.1	94.5	GSM250914	Tc_7dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.9	94.0	GSM143515	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

Inter-species module comparison

A co-expression module including the maize gene, Zm.14411.2.S1_at, orthologous to the query gene, Ta.6101.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	79.5	Zm.14411.2.S1_at	At3g48890	membrane steroid-binding protein 1	-	6e-10	At3g48890	ATMP2	O.I.	H.G.	S.X.	Please select
0.96	99.8	Zm.4811.1.A1_x_at	At3g48890	UDP-N-acetylglucosamine pyrophosphorylase	-	6e-5	At2g35020	UTP--glucose-1-phosphate uridylyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.88	96.7	Zm.6822.2.S1_a_at	At3g48890	receptor expression-enhancing protein 3	-	3e-2	At5g42560	abscisic acid-responsive HVA22 family protein	O.I.	H.G.	S.X.	Please select
0.88	96.7	Zm.5962.1.S1_at	At3g48890	glyoxalase I	-	1e-17	At1g11840	ATGLX1 (GLYOXALASE I HOMOLOG)	O.I.	H.G.	S.X.	Please select
0.88	96.7	Zm.3350.2.A1_at	At3g48890	U6 snRNA-associated Sm-like protein LSm4	-	7e-34	At5g27720	emb1644 (embryo defective 1644)	O.I.	H.G.	S.X.	Please select
0.88	96.7	Zm.3221.1.S1_at	At3g48890	-	-	5e-39	At5g45140	NRPC2	O.I.	H.G.	S.X.	Please select
0.86	96.3	Zm.13188.3.S1_x_at	At3g48890	hypothetical protein LOC100193240	-	8e-6	At2g37270	ATRPS5B (RIBOSOMAL PROTEIN 5B)	O.I.	H.G.	S.X.	Please select
0.81	94.3	Zm.7422.1.A1_at	At3g48890	anthocyanidin 3-O-glucosyltransferase	-	2e+0	At2g01250	60S ribosomal protein L7 (RPL7B)	O.I.	H.G.	S.X.	Please select
0.79	92.8	Zm.12898.1.A1_at	At3g48890	hypothetical protein LOC100274425	-	8e+0	At3g25950	-	O.I.	H.G.	S.X.	Please select
0.78	92.5	Zm.15553.1.S1_at	At3g48890	hypothetical protein LOC100193348	-	3e-7	At2g17720	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please select
0.72	88.6	Zm.17200.1.S1_at	At3g48890	-	-	3e+0	At4g24060	Dof-type zinc finger domain-containing protein	O.I.	H.G.	S.X.	Please select
0.71	88.2	Zm.14354.2.A1_a_at	At3g48890	-	-	2e-9	At5g11560	catalytic	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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