Co-expression analysis

Gene ID	Ta.6101.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g48890: ATMP2 (HF=2e-10)
Module size	6 genes
NF	0.67
%ile	91.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	93.4	0.96	Ta.6101.1.S1_at	CD937323	-	-	2e-10	At3g48890	ATMP2	O.I.	H.G.	S.X.	Please select
0.83	93.4	0.96	Ta.6113.1.S1_at	CA668966	-	-	3e+0	At5g22300	NIT4 (NITRILASE 4)	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.96	Ta.6113.2.S1_x_at	AJ611253	-	-	2e+0	At2g46810	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.57	79.2	0.97	Ta.6113.1.S1_a_at	CA668966	-	-	3e+0	At5g22300	NIT4 (NITRILASE 4)	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.97	Ta.6101.2.S1_a_at	CA697971	-	-	3e-16	At3g48890	ATMP2	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.97	Ta.24202.1.S1_s_at	CA693707	-	-	7e+0	At4g33640	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
26.7	99.8	GSM314289	tissue type: 22 DAP endosperm - rep3	GSE12508	Transcription patterns during wheat development
21.8	99.8	GSM314288	tissue type: 22 DAP endosperm - rep2	GSE12508	Transcription patterns during wheat development
19.4	99.7	GSM314287	tissue type: 22 DAP endosperm - rep1	GSE12508	Transcription patterns during wheat development
8.7	98.9	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
6.2	98.1	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.3	95.0	GSM143517	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.3	95.0	GSM143502	Thatcher_Lr34 (resistant), rust inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.3	95.0	GSM143506	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.1	94.5	GSM250914	Tc_7dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.9	94.0	GSM143515	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

Inter-species module comparison

A co-expression module including the grape gene, 1609309_at, orthologous to the query gene, Ta.6101.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	1609309_at	At3g48890	-	-	4e-43	At3g48890	ATMP2	O.I.	H.G.	S.X.	Please select
0.14	14.4	1610199_at	At3g48890	similar to hydrolase, alpha/beta fold family protein	-	2e-9	At1g26355	SP1L1 (SPIRAL1-LIKE1)	O.I.	H.G.	S.X.	Please select
0.07	7.8	1606958_s_at	At3g48890	hypothetical protein LOC100253241	-	6e-38	At3g48890	ATMP2	O.I.	H.G.	S.X.	Please select
0.06	6.8	1608493_at	At3g48890	similar to F28K19.26	-	4e-1	At1g29140	pollen Ole e 1 allergen and extensin family protein	O.I.	H.G.	S.X.	Please select
0.02	3.2	1608697_at	At3g48890	-	-	4e+0	At4g23420	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.02	3.2	1615991_s_at	At3g48890	hypothetical protein LOC100241833	-	1e-22	At4g38130	HD1 (HISTONE DEACETYLASE 1)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage