Co-expression analysis

Gene ID Ta.6101.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g48890: ATMP2 (HF=2e-10)
Module size 6 genes
NF 0.67
%ile 91.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8393.40.96Ta.6101.1.S1_atCD937323--2e-10At3g48890ATMP2O.I.H.G.S.X.
0.8393.40.96Ta.6113.1.S1_atCA668966--3e+0At5g22300NIT4 (NITRILASE 4)O.I.H.G.S.X.
0.6081.00.96Ta.6113.2.S1_x_atAJ611253--2e+0At2g46810basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.5779.20.97Ta.6113.1.S1_a_atCA668966--3e+0At5g22300NIT4 (NITRILASE 4)O.I.H.G.S.X.
0.5072.40.97Ta.6101.2.S1_a_atCA697971--3e-16At3g48890ATMP2O.I.H.G.S.X.
0.3142.70.97Ta.24202.1.S1_s_atCA693707--7e+0At4g33640unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
26.799.8GSM314289tissue type: 22 DAP endosperm - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
21.899.8GSM314288tissue type: 22 DAP endosperm - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
19.499.7GSM314287tissue type: 22 DAP endosperm - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
8.798.9GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
6.298.1GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.395.0GSM143517Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
3.395.0GSM143502Thatcher_Lr34 (resistant), rust inoculated basal leaf, replication 1GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
3.395.0GSM143506Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
3.194.5GSM250914Tc_7dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
2.994.0GSM143515Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 1GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO

Inter-species module comparison

A co-expression module including the barley gene, Contig10724_at, orthologous to the query gene, Ta.6101.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6581.4Contig10724_atAt3g48890--1e-10At3g48890ATMP2O.I.H.G.S.X.
0.4661.0Contig13436_atAt3g48890--3e-1At3g23200unknown proteinO.I.H.G.S.X.
0.4255.2Contig13168_atAt3g48890--3e+0At5g50130short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.3849.5Contig13036_atAt3g48890--6e-1At3g57000nucleolar essential protein-relatedO.I.H.G.S.X.
0.3849.5Contig4654_atAt3g48890--2e-2At3g57930unknown proteinO.I.H.G.S.X.
0.3443.6Contig6491_atAt3g48890--6e-1At5g02230haloacid dehalogenase-like hydrolase family proteinO.I.H.G.S.X.
0.3240.3Contig11193_s_atAt3g48890--2e-2At1g72880acid phosphatase survival protein SurE, putativeO.I.H.G.S.X.
0.3138.6Contig3848_atAt3g48890--7e-23At4g34350HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE)O.I.H.G.S.X.
0.3037.0Contig8100_atAt3g48890--1e-24At5g22000RHF2A (RING-H2 GROUP F2A)O.I.H.G.S.X.
0.2427.2Contig4414_atAt3g48890--5e-3At2g03320unknown proteinO.I.H.G.S.X.
0.2122.6Contig7040_atAt3g48890--6e-8At3g54670TTN8 (TITAN8)O.I.H.G.S.X.
0.1919.6Contig23171_atAt3g48890--2e+0At1g11570nuclear transport factor 2 (NTF2), putativeO.I.H.G.S.X.
0.1412.9Contig7178_s_atAt3g48890--2e+0At4g35900FDO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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