CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.6101.1.S1_at

Gene name
Homology with Arabidopsis Similar to At3g48890: ATMP2 (HF=2e-10)

Module size 6 genes

NF 0.67

%ile 91.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 93.4 0.96 Ta.6101.1.S1_at CD937323 - - 2e-10 At3g48890 ATMP2 O.I. H.G. S.X.
0.83 93.4 0.96 Ta.6113.1.S1_at CA668966 - - 3e+0 At5g22300 NIT4 (NITRILASE 4) O.I. H.G. S.X.
0.60 81.0 0.96 Ta.6113.2.S1_x_at AJ611253 - - 2e+0 At2g46810 basic helix-loop-helix (bHLH) family protein O.I. H.G. S.X.
0.57 79.2 0.97 Ta.6113.1.S1_a_at CA668966 - - 3e+0 At5g22300 NIT4 (NITRILASE 4) O.I. H.G. S.X.
0.50 72.4 0.97 Ta.6101.2.S1_a_at CA697971 - - 3e-16 At3g48890 ATMP2 O.I. H.G. S.X.
0.31 42.7 0.97 Ta.24202.1.S1_s_at CA693707 - - 7e+0 At4g33640 unknown protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
26.7 99.8 GSM314289 tissue type: 22 DAP endosperm - rep3 GSE12508 Transcription patterns during wheat development
21.8 99.8 GSM314288 tissue type: 22 DAP endosperm - rep2 GSE12508 Transcription patterns during wheat development
19.4 99.7 GSM314287 tissue type: 22 DAP endosperm - rep1 GSE12508 Transcription patterns during wheat development
8.7 98.9 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
6.2 98.1 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
3.3 95.0 GSM143517 Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.3 95.0 GSM143502 Thatcher_Lr34 (resistant), rust inoculated basal leaf, replication 1 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.3 95.0 GSM143506 Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.1 94.5 GSM250914 Tc_7dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.9 94.0 GSM143515 Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 1 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g48890, orthologous to the query gene, Ta.6101.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.12 4.9 At3g48890 824050 ATMP2 putative progesterone-binding protein homolog (Atmp2) mRNA, O.I. H.G. S.X.
0.50 65.3 At3g54640 824629 TSA1 (TRYPTOPHAN SYNTHASE ALPHA CHAIN) Catalyzes the conversion of indole-3-glycerolphosphate to indole, the penultimate reaction in the biosynthesis of tryptophan. Functions as a heterocomplex with tryptophan synthase beta subunit (TSA2). O.I. H.G. S.X.
0.44 57.2 At1g10700 837613 ribose-phosphate pyrophosphokinase 3 / phosphoribosyl diphosphate synthetase 3 (PRS3) F:magnesium ion binding, ribose phosphate diphosphokinase activity;P:cellular biosynthetic process, nucleotide biosynthetic process, nucleoside metabolic process, ribonucleoside monophosphate biosynthetic process;C:chloroplast;BOMFAPV O.I. H.G. S.X.
0.43 55.3 At2g04400 814980 indole-3-glycerol phosphate synthase (IGPS) F:indole-3-glycerol-phosphate synthase activity;P:tryptophan biosynthetic process;C:chloroplast;BOAFP O.I. H.G. S.X.
0.40 50.8 At2g24180 816952 CYP71B6 (CYTOCHROME P450 71B6) cytochrome P450 monooxygenase O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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