CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.6082.1.S1_x_at

Gene name
Homology with Arabidopsis Similar to At3g07590: small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative (HF=5e-1)

Module size 6 genes

NF 0.81

%ile 97.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 0.97 Ta.6082.1.S1_x_at BQ752961 - - 5e-1 At3g07590 small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative O.I. H.G. S.X.
0.83 93.4 0.97 Ta.6082.1.S1_at BQ752961 - - 5e-1 At3g07590 small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative O.I. H.G. S.X.
0.80 92.2 0.97 Ta.7147.3.S1_x_at BJ315882 - - 5e-3 At3g54300 ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727) O.I. H.G. S.X.
0.73 89.1 0.97 Ta.7147.3.S1_a_at BJ315882 - - 5e-3 At3g54300 ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727) O.I. H.G. S.X.
0.61 82.0 0.97 Ta.7147.2.S1_at CK161455 - - 9e-9 At3g54300 ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727) O.I. H.G. S.X.
0.50 72.4 0.98 Ta.1862.2.S1_x_at CA690286 - - 1e-12 At1g53400 unknown protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.4 99.5 GSM298071 Crown tissue of Paragon at 3 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
12.4 99.4 GSM298072 Crown tissue of Paragon at 3 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
7.8 98.7 GSM314284 tissue type: 22 DAP embryo - rep1 GSE12508 Transcription patterns during wheat development
6.8 98.4 GSM298076 Crown tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
4.5 96.9 GSM298075 Crown tissue of Paragon at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
3.5 95.4 GSM314286 tissue type: 22 DAP embryo - rep3 GSE12508 Transcription patterns during wheat development
3.3 95.0 GSM250914 Tc_7dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.2 94.8 GSM314285 tissue type: 22 DAP embryo - rep2 GSE12508 Transcription patterns during wheat development
3.1 94.5 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
3.1 94.5 GSM250908 Tc_7dpi_inoculated_rep2 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

A co-expression module including the maize gene, Zm.997.1.A1_at, orthologous to the query gene, Ta.6082.1.S1_x_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 79.5 Zm.997.1.A1_at At3g07590 hypothetical protein LOC100275923 - 1e+0 At2g17040 anac036 (Arabidopsis NAC domain containing protein 36) O.I. H.G. S.X.
0.44 55.7 Zm.9826.1.A1_at At3g07590 - - 1e+0 At3g28680 prolylcarboxypeptidase-related O.I. H.G. S.X.
0.42 51.3 Zm.9706.1.A1_at At3g07590 - - 4e+0 At1g70000 DNA-binding family protein O.I. H.G. S.X.
0.40 48.5 Zm.11612.1.A1_at At3g07590 - - 3e-1 At1g06135 unknown protein O.I. H.G. S.X.
0.36 41.3 Zm.9776.1.A1_at At3g07590 hypothetical protein LOC100193229 - 8e-8 At1g79810 TED3 (REVERSAL OF THE DET PHENOTYPE 3) O.I. H.G. S.X.
0.33 36.0 Zm.788.2.A1_at At3g07590 hypothetical protein LOC100194151 - 1e-73 At3g27240 cytochrome c1, putative O.I. H.G. S.X.
0.27 24.6 Zm.9291.1.S1_at At3g07590 hypothetical protein LOC100272653 - 3e+0 At3g54020 phosphatidic acid phosphatase-related / PAP2-related O.I. H.G. S.X.
0.24 19.8 Zm.9387.1.A1_at At3g07590 Hypothetical protein LOC100193233 - 4e+0 At4g09440 unknown protein O.I. H.G. S.X.
0.19 12.8 Zm.17520.1.A1_a_at At3g07590 - - 3e-2 At1g29120 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera

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