Co-expression analysis

Gene ID	Ta.6082.1.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At3g07590: small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative (HF=5e-1)
Module size	6 genes
NF	0.81
%ile	97.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.97	Ta.6082.1.S1_x_at	BQ752961	-	-	5e-1	At3g07590	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	O.I.	H.G.	S.X.	Please select
0.83	93.4	0.97	Ta.6082.1.S1_at	BQ752961	-	-	5e-1	At3g07590	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.97	Ta.7147.3.S1_x_at	BJ315882	-	-	5e-3	At3g54300	ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)	O.I.	H.G.	S.X.	Please select
0.73	89.1	0.97	Ta.7147.3.S1_a_at	BJ315882	-	-	5e-3	At3g54300	ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)	O.I.	H.G.	S.X.	Please select
0.61	82.0	0.97	Ta.7147.2.S1_at	CK161455	-	-	9e-9	At3g54300	ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.98	Ta.1862.2.S1_x_at	CA690286	-	-	1e-12	At1g53400	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.4	99.5	GSM298071	Crown tissue of Paragon at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
12.4	99.4	GSM298072	Crown tissue of Paragon at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
7.8	98.7	GSM314284	tissue type: 22 DAP embryo - rep1	GSE12508	Transcription patterns during wheat development
6.8	98.4	GSM298076	Crown tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.5	96.9	GSM298075	Crown tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.5	95.4	GSM314286	tissue type: 22 DAP embryo - rep3	GSE12508	Transcription patterns during wheat development
3.3	95.0	GSM250914	Tc_7dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.2	94.8	GSM314285	tissue type: 22 DAP embryo - rep2	GSE12508	Transcription patterns during wheat development
3.1	94.5	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.1	94.5	GSM250908	Tc_7dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.204102.1.S1_x_at, orthologous to the query gene, Ta.6082.1.S1_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.62	87.2	PtpAffx.204102.1.S1_x_at	At3g07590	hypothetical protein	-	2e+0	At1g66380	MYB114 (myb domain protein 114)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	PtpAffx.203770.1.S1_at	At3g07590	hypothetical protein	-	5e-1	At4g15770	RNA binding / protein binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.207731.1.S1_at	At3g07590	hypothetical protein	-	2e+0	At3g10620	ATNUDX26 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 26)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	PtpAffx.208954.1.S1_at	At3g07590	hypothetical protein	-	1e+1	At5g27830	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.39	64.6	Ptp.1076.2.S1_at	At3g07590	-	-	7e-2	At2g36440	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	PtpAffx.30451.2.S1_at	At3g07590	hypothetical protein	-	1e-19	At3g58600	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.63663.1.A1_at	At3g07590	-	-	2e-1	At3g02940	MYB107 (myb domain protein 107)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	PtpAffx.208444.1.S1_at	At3g07590	hypothetical protein	-	3e-1	At5g47790	forkhead-associated domain-containing protein / FHA domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	PtpAffx.224415.1.S1_at	At3g07590	-	-	2e-1	At5g42500	disease resistance-responsive family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	PtpAffx.213687.1.S1_at	At3g07590	-	-	3e+0	At5g66070	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.209803.1.S1_x_at	At3g07590	hypothetical protein	-	2e-10	At1g29720	protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	PtpAffx.222982.1.S1_at	At3g07590	hypothetical protein	-	4e-42	At1g23460	polygalacturonase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	PtpAffx.203615.1.S1_at	At3g07590	hypothetical protein	-	8e-1	At3g58330	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	PtpAffx.201224.1.S1_at	At3g07590	hypothetical protein	-	1e-1	At5g21110	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

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