CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.6082.1.S1_x_at

Gene name
Homology with Arabidopsis Similar to At3g07590: small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative (HF=5e-1)

Module size 6 genes

NF 0.81

%ile 97.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 0.97 Ta.6082.1.S1_x_at BQ752961 - - 5e-1 At3g07590 small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative O.I. H.G. S.X.
0.83 93.4 0.97 Ta.6082.1.S1_at BQ752961 - - 5e-1 At3g07590 small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative O.I. H.G. S.X.
0.80 92.2 0.97 Ta.7147.3.S1_x_at BJ315882 - - 5e-3 At3g54300 ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727) O.I. H.G. S.X.
0.73 89.1 0.97 Ta.7147.3.S1_a_at BJ315882 - - 5e-3 At3g54300 ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727) O.I. H.G. S.X.
0.61 82.0 0.97 Ta.7147.2.S1_at CK161455 - - 9e-9 At3g54300 ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727) O.I. H.G. S.X.
0.50 72.4 0.98 Ta.1862.2.S1_x_at CA690286 - - 1e-12 At1g53400 unknown protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.4 99.5 GSM298071 Crown tissue of Paragon at 3 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
12.4 99.4 GSM298072 Crown tissue of Paragon at 3 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
7.8 98.7 GSM314284 tissue type: 22 DAP embryo - rep1 GSE12508 Transcription patterns during wheat development
6.8 98.4 GSM298076 Crown tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
4.5 96.9 GSM298075 Crown tissue of Paragon at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
3.5 95.4 GSM314286 tissue type: 22 DAP embryo - rep3 GSE12508 Transcription patterns during wheat development
3.3 95.0 GSM250914 Tc_7dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.2 94.8 GSM314285 tissue type: 22 DAP embryo - rep2 GSE12508 Transcription patterns during wheat development
3.1 94.5 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
3.1 94.5 GSM250908 Tc_7dpi_inoculated_rep2 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

A co-expression module including the barley gene, Contig6538_at, orthologous to the query gene, Ta.6082.1.S1_x_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.76 89.8 Contig6538_at At3g07590 - - 2e+0 At3g21450 protein kinase family protein O.I. H.G. S.X.
0.52 68.3 rbaal21g04_s_at At3g07590 - - 6e+0 At3g43480 - O.I. H.G. S.X.
0.43 56.4 Contig25850_at At3g07590 - - 4e-4 At5g67490 unknown protein O.I. H.G. S.X.
0.40 53.1 Contig15307_at At3g07590 - - 2e+0 At3g15357 unknown protein O.I. H.G. S.X.
0.36 47.1 Contig13941_at At3g07590 - - 6e+0 At5g37900 seven in absentia (SINA) family protein O.I. H.G. S.X.
0.35 45.1 Contig11253_at At3g07590 - - 1e+0 At4g34290 SWIB complex BAF60b domain-containing protein O.I. H.G. S.X.
0.35 45.1 Contig13943_s_at At3g07590 - - 4e+0 At4g00880 auxin-responsive family protein O.I. H.G. S.X.
0.31 38.6 Contig5401_at At3g07590 - - 1e-39 At1g03475 LIN2 (LESION INITIATION 2) O.I. H.G. S.X.
0.26 30.4 Contig7370_at At3g07590 - - 3e+0 At2g14910 unknown protein O.I. H.G. S.X.
0.24 27.2 Contig11458_at At3g07590 - - 6e-1 At1g51730 RWD domain-containing protein O.I. H.G. S.X.
0.21 22.6 Contig4967_at At3g07590 - - 5e-13 At1g75440 UBC16 (ubiquitin-conjugating enzyme 16) O.I. H.G. S.X.
0.20 21.1 Contig19631_at At3g07590 - - 4e-1 At2g04880 ZAP1 (ZINC-DEPENDENT ACTIVATOR PROTEIN-1) O.I. H.G. S.X.
0.20 21.1 Contig12227_at At3g07590 - - 5e-13 At1g33290 sporulation protein-related O.I. H.G. S.X.
0.18 18.2 Contig10917_at At3g07590 - - 5e-2 At4g17090 CT-BMY (CHLOROPLAST BETA-AMYLASE) O.I. H.G. S.X.
0.18 18.2 Contig7336_s_at At3g07590 - - 5e+0 At3g26520 TIP2 (TONOPLAST INTRINSIC PROTEIN 2) O.I. H.G. S.X.
0.16 15.3 Contig1157_at At3g07590 - - 6e-15 At1g07790 HTB1 O.I. H.G. S.X.
0.14 12.9 Contig5560_at At3g07590 - - 4e-1 At3g51550 FER (FERONIA) O.I. H.G. S.X.
0.12 10.4 Contig14031_at At3g07590 - - 5e-4 At1g07560 leucine-rich repeat protein kinase, putative O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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