Co-expression analysis

Gene ID	Ta.6052.2.S1_a_at
Gene name
Homology with Arabidopsis	Similar to At3g27740: CARA (CARBAMOYL PHOSPHATE SYNTHETASE A) (HF=3e-8)
Module size	8 genes
NF	0.32
%ile	52.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.3	0.96	Ta.6052.2.S1_a_at	CA661259	-	-	3e-8	At3g27740	CARA (CARBAMOYL PHOSPHATE SYNTHETASE A)	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.97	Ta.5407.2.S1_x_at	CA735601	-	-	2e+0	At3g62020	GLP10 (GERMIN-LIKE PROTEIN 10)	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.97	Ta.5407.2.S1_at	CA735601	-	-	2e+0	At3g62020	GLP10 (GERMIN-LIKE PROTEIN 10)	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.97	Ta.5407.1.S1_x_at	CN012562	-	-	1e-7	At1g77370	glutaredoxin, putative	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.97	Ta.10431.1.S1_a_at	CD454717	-	-	2e-7	At2g02960	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.97	Ta.3718.2.S1_a_at	CD895847	-	-	4e-52	At2g26140	ftsh4 (FtsH protease 4)	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.97	Ta.9887.2.S1_a_at	CK212824	-	-	8e-2	At5g57290	60S acidic ribosomal protein P3 (RPP3B)	O.I.	H.G.	S.X.	Please select
0.15	17.1	0.97	Ta.9903.1.S1_at	CK154650	-	-	8e+0	At5g51105	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.2	99.0	GSM314276	tissue type: pistil, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
8.6	98.9	GSM143506	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
7.2	98.5	GSM143507	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.4	97.7	GSM143505	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.2	97.5	GSM324488	Si- B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
4.5	96.9	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4	96.8	GSM250894	TcLr34_3dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.1	96.4	GSM314277	tissue type: pistil, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
3.4	95.2	GSM250888	TcLr34_3dpi_inoculated_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.1	94.5	GSM324487	Si- B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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