Co-expression analysis

Gene ID	Ta.6012.1.S1_a_at
Gene name
Homology with Arabidopsis	Similar to At5g16640: pentatricopeptide (PPR) repeat-containing protein (HF=3e+0)
Module size	6 genes
NF	0.11
%ile	23.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.3	0.94	Ta.6012.1.S1_a_at	BJ266501	-	-	3e+0	At5g16640	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.93	Ta.6012.2.A1_x_at	BJ294301	-	-	4e+0	At1g64970	G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE)	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.93	Ta.8039.1.S1_at	BQ161168	-	-	4e-2	At4g01897	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.94	Ta.5742.1.A1_x_at	BJ288789	-	-	2e-1	At2g29400	TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1)	O.I.	H.G.	S.X.	Please select
0.10	11.3	0.93	Ta.1057.1.A1_at	BQ171746	-	-	8e-5	At5g01180	PTR5 (PEPTIDE TRANSPORTER 5)	O.I.	H.G.	S.X.	Please select
0.04	5.8	0.94	Ta.21242.1.A1_at	BG905239	-	-	2e+1	At5g39670	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
21.0	99.7	GSM298057	Leaf tissue of Harnesk at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
20.8	99.7	GSM298058	Leaf tissue of Harnesk at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
10.9	99.3	GSM298082	Leaf tissue of Solstice at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
10.4	99.2	GSM298081	Leaf tissue of Solstice at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
6.5	98.3	GSM298091	Leaf tissue of Solstice at 9 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.6	95.6	GSM324493	Si+ B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.2	94.8	GSM298069	Leaf tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
2.8	93.6	GSM298090	Leaf tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
2.8	93.6	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.8	93.6	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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