Co-expression analysis

Gene ID	Ta.5991.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g26560: BGLU40 (BETA GLUCOSIDASE 40) (HF=1e-6)
Module size	20 genes
NF	0.37
%ile	60.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.92	98.5	0.93	Ta.5991.2.S1_at	BJ258436	-	-	1e-6	At1g26560	BGLU40 (BETA GLUCOSIDASE 40)	O.I.	H.G.	S.X.	Please select
0.56	78.6	0.97	Ta.17068.2.S1_a_at	CA742333	-	-	2e-2	At5g19540	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.97	Ta.5193.2.S1_a_at	BQ841676	-	-	2e-2	At3g05600	epoxide hydrolase, putative	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.95	TaAffx.36762.2.S1_s_at	BJ315636	-	-	3e+0	At5g13180	ANAC083 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 83)	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.97	TaAffx.97229.1.S1_at	AJ613263	-	-	1e-3	At3g27300	G6PD5 (glucose-6-phosphate dehydrogenase 5)	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.96	TaAffx.122001.1.S1_at	CD879177	-	-	2e-9	At1g32220	binding / catalytic/ coenzyme binding	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.96	Ta.5193.1.S1_at	CA645042	-	-	1e-8	At3g05600	epoxide hydrolase, putative	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.97	Ta.7213.2.S1_at	BJ270436	-	-	5e-7	At4g02260	RSH1 (RELA-SPOT HOMOLOG 1)	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.96	Ta.4786.2.S1_a_at	BG906560	-	-	1e+0	At5g60490	FLA12	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.96	Ta.9621.2.S1_at	CK211087	-	-	7e+0	At5g59470	PQ-loop repeat family protein / transmembrane family protein	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.96	Ta.6049.2.S1_a_at	BJ259407	-	-	3e-16	At4g24280	cpHsc70-1 (chloroplast heat shock protein 70-1)	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.95	TaAffx.122974.1.S1_at	CA660914	-	-	9e-15	At5g46110	APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2)	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.97	TaAffx.3457.1.S1_at	CA620997	-	-	2e-2	At2g40690	GLY1	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.96	TaAffx.117057.1.S1_s_at	CA719086	-	-	3e-9	At4g39960	DNAJ heat shock family protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.95	TaAffx.28518.1.S1_at	CA659137	-	-	4e+0	At5g06060	tropinone reductase, putative / tropine dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.96	TaAffx.121177.1.S1_at	CA732736	-	-	3e-11	At2g30390	FC2 (FERROCHELATASE 2)	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.95	TaAffx.79022.1.S1_at	BG905150	-	-	4e+0	At3g19150	KRP6 (KIP-RELATED PROTEIN 6)	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.97	TaAffx.98560.1.S1_at	CA600498	-	-	3e-7	At5g17530	phosphoglucosamine mutase family protein	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.97	TaAffx.121444.1.S1_x_at	CD874911	-	-	2e-12	At1g04620	coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.96	Ta.9139.2.S1_at	CA636063	-	-	1e-48	At2g18710	SCY1 (SecY Homolog 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.2	98.5	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.6	97.8	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.5	97.8	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.5	97.8	GSM314252	tissue type: germinating seed, coleoptile - rep2	GSE12508	Transcription patterns during wheat development
5.4	97.7	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.2	97.5	GSM314251	tissue type: germinating seed, coleoptile - rep1	GSE12508	Transcription patterns during wheat development
5.1	97.5	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.0	97.4	GSM314253	tissue type: germinating seed, coleoptile - rep3	GSE12508	Transcription patterns during wheat development
4.6	97.0	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.0	96.3	GSM324487	Si- B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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