Co-expression analysis

Gene ID	Ta.5934.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g20280: zinc finger (CCCH-type) family protein (HF=4e-15)
Module size	9 genes
NF	0.43
%ile	67.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	81.0	0.98	Ta.5934.1.S1_at	CD888662	-	-	4e-15	At2g20280	zinc finger (CCCH-type) family protein	O.I.	H.G.	S.X.	Please select
0.63	83.1	0.98	Ta.4408.1.A1_at	BJ265880	-	-	2e+0	At4g35750	Rho-GTPase-activating protein-related	O.I.	H.G.	S.X.	Please select
0.52	73.7	0.98	Ta.2136.1.S1_at	BJ320333	-	-	7e-9	At1g50200	ALATS (ALANYL-TRNA SYNTHETASE)	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.98	Ta.25019.1.S1_at	BT009274.1	-	-	9e-5	At2g23350	PAB4 (POLY(A) BINDING PROTEIN 4)	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.98	Ta.14349.1.S1_x_at	CK161301	-	-	9e-26	At1g45000	26S proteasome regulatory complex subunit p42D, putative	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.98	Ta.2706.3.S1_at	CK205780	-	-	2e-15	At1g79920	ATP binding	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.98	Ta.2490.1.S1_at	BJ250631	-	-	4e-46	At3g59990	MAP2B (METHIONINE AMINOPEPTIDASE 2B)	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.98	Ta.735.1.S1_at	CK215595	-	-	2e-66	At3g62120	tRNA synthetase class II (G, H, P and S) family protein	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.98	Ta.23008.1.S1_at	BJ262674	-	-	1e-2	At5g41600	BTI3 (VIRB2-INTERACTING PROTEIN 3)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.5	98.3	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
6.4	98.2	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
5.7	97.9	GSM343685	Wheat var. Kennedy_control_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
5.2	97.5	GSM343682	Wheat var. Kennedy_control_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.9	96.1	GSM343687	Wheat var. Kennedy_Fp inoculated_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.7	95.8	GSM343678	Wheat var. Kennedy_control_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.5	95.4	GSM343686	Wheat var. Kennedy_Fp inoculated_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.1	94.5	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.0	94.3	GSM324491	Si+ B- rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
2.6	92.9	GSM138169	genotype B68 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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