CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.5873.2.S1_at

Gene name
Homology with Arabidopsis Similar to At3g23830: GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4) (HF=5e-1)

Module size 40 genes

NF 0.85

%ile 98.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.92 98.5 1.00 Ta.5873.2.S1_at CD902597 - - 5e-1 At3g23830 GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4) O.I. H.G. S.X.
0.95 99.1 1.00 Ta.19.1.S1_at CD902219 wheat type V thionin - 2e+0 At5g07600 oleosin / glycine-rich protein O.I. H.G. S.X.
0.94 98.9 1.00 Ta.27778.6.S1_x_at BJ232514 Alpha/beta-gliadin precursor - 4e-2 At1g49010 myb family transcription factor O.I. H.G. S.X.
0.94 98.9 1.00 Ta.23141.1.S1_at BJ235767 puroindoline-a - 2e+0 At4g29430 rps15ae (ribosomal protein S15A E) O.I. H.G. S.X.
0.93 98.7 1.00 Ta.23142.11.S1_x_at BJ242011 Low molecular weight glutenin subunit - 5e-1 At4g31580 SRZ-22 O.I. H.G. S.X.
0.93 98.7 1.00 Ta.2448.1.S1_at BJ237853 - - 6e-1 At4g12050 DNA-binding protein-related O.I. H.G. S.X.
0.93 98.7 1.00 Ta.131.1.S1_at BE430809 low-molecular-weight glutenin storage protein - 7e-1 At3g46613 RTFL4 (ROTUNDIFOLIA LIKE 4) O.I. H.G. S.X.
0.93 98.7 1.00 Ta.23142.7.S1_x_at BQ244524 - - 9e-3 At5g61270 PIF7 (PHYTOCHROME-INTERACTING FACTOR7) O.I. H.G. S.X.
0.92 98.5 1.00 Ta.24114.18.S1_x_at BJ239750 - - 1e+0 At5g10520 RBK1 (Rop Binding protein Kinases 1) O.I. H.G. S.X.
0.90 94.8 1.00 Ta.24114.11.S1_x_at BJ237788 Alpha/beta-gliadin precursor - 3e+0 At5g53590 auxin-responsive family protein O.I. H.G. S.X.
0.90 94.8 1.00 Ta.24114.1.S1_x_at M10092.1 pre-alpha-/beta-gliadin A-II - 3e+0 At5g53590 auxin-responsive family protein O.I. H.G. S.X.
0.89 94.6 1.00 Ta.1257.2.A1_x_at BJ242255 - - 7e-1 At1g54830 NF-YC3 (NUCLEAR FACTOR Y, SUBUNIT C3) O.I. H.G. S.X.
0.88 94.4 1.00 Ta.160.1.S1_x_at U86028.1 pre-gamma-gliadin B-I - 7e-1 At5g62575 unknown protein O.I. H.G. S.X.
0.88 94.4 1.00 Ta.24114.14.S1_x_at BJ241838 Gamma-gliadin /// Gamma-gliadin - 3e+0 At3g20865 AGP40 (arabinogalactan-protein 40) O.I. H.G. S.X.
0.87 94.2 1.00 Ta.14625.1.S1_x_at BJ242520 lmw-gs - 3e+0 At3g20865 AGP40 (arabinogalactan-protein 40) O.I. H.G. S.X.
0.86 94.1 1.00 Ta.24963.1.S1_x_at BJ241536 HMW glutenin - 1e+0 At5g65790 MYB68 (MYB DOMAIN PROTEIN 68) O.I. H.G. S.X.
0.86 94.1 1.00 TaAffx.128418.2.S1_x_at BJ237448 gamma-gliadin /// gamma-gliadin /// gamma-gliadin - 2e+0 At3g42150 unknown protein O.I. H.G. S.X.
0.85 93.8 1.00 Ta.27780.1.S1_x_at CD916747 beta amylase - 2e-2 At4g15210 BAM5 (BETA-AMYLASE 5) O.I. H.G. S.X.
0.84 93.6 1.00 Ta.27780.2.A1_a_at BJ243011 - - 6e+0 At5g15940 binding / catalytic/ oxidoreductase O.I. H.G. S.X.
0.84 93.6 1.00 Ta.115.1.S1_at CD453742 puroindoline-b - 6e+0 At5g64950 mitochondrial transcription termination factor-related / mTERF-related O.I. H.G. S.X.
0.84 93.6 1.00 Ta.24114.8.S1_x_at BJ238810 Gamma-gliadin - 7e-1 At3g13810 AtIDD11 (Arabidopsis thaliana Indeterminate(ID)-Domain 11) O.I. H.G. S.X.
0.84 93.6 1.00 Ta.30782.9.S1_x_at BJ237631 Gamma-gliadin - 8e-1 At3g20865 AGP40 (arabinogalactan-protein 40) O.I. H.G. S.X.
0.84 93.6 1.00 Ta.117.1.S1_at CD914973 serpin - 7e-1 At1g17650 GLYR2 (GLYOXYLATE REDUCTASE 2) O.I. H.G. S.X.
0.84 93.6 1.00 Ta.24298.1.S1_x_at BT008927.1 - - 1e+0 At4g15950 NRPD4 O.I. H.G. S.X.
0.83 93.4 1.00 Ta.14625.2.S1_x_at BQ806669 - - 2e-1 At5g18550 nucleic acid binding / zinc ion binding O.I. H.G. S.X.
0.83 93.4 1.00 TaAffx.52381.1.S1_at CA708355 - - 1e+0 At5g22530 unknown protein O.I. H.G. S.X.
0.83 93.4 1.00 Ta.6175.1.S1_x_at CD906599 - - 6e+0 At5g66300 NAC105 (NAC DOMAIN CONTAINING PROTEIN 105) O.I. H.G. S.X.
0.83 93.4 1.00 Ta.6699.1.S1_at M11076.1 pre-alpha-/beta-gliadin A-III - 2e-1 At1g49010 myb family transcription factor O.I. H.G. S.X.
0.82 92.7 1.00 Ta.28632.1.S1_x_at M16060.1 gamma-gliadin - 3e-2 At1g18750 AGL65 (AGAMOUS-LIKE 65) O.I. H.G. S.X.
0.81 92.4 1.00 Ta.1304.1.S1_at CA717552 serine proteinase inhibitor-like allergen - 6e+0 At2g47690 NADH-ubiquinone oxidoreductase-related O.I. H.G. S.X.
0.81 92.4 1.00 Ta.6175.1.S1_at CD906599 - - 6e+0 At5g66300 NAC105 (NAC DOMAIN CONTAINING PROTEIN 105) O.I. H.G. S.X.
0.81 92.4 1.00 Ta.27780.2.A1_x_at BJ243011 - - 6e+0 At5g15940 binding / catalytic/ oxidoreductase O.I. H.G. S.X.
0.80 92.2 1.00 TaAffx.4219.1.S1_at CA715111 - - 4e+0 At3g27410 unknown protein O.I. H.G. S.X.
0.79 91.3 1.00 Ta.1308.1.S1_at CD918842 beta purothionin precursor - 1e-1 At4g14550 IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14) O.I. H.G. S.X.
0.79 91.3 1.00 Ta.27777.1.S2_at BJ239761 - - 8e-8 At3g13200 EMB2769 (EMBRYO DEFECTIVE 2769) O.I. H.G. S.X.
0.78 91.1 1.00 Ta.27780.3.S1_x_at CD897313 - - 5e+0 At5g54740 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein O.I. H.G. S.X.
0.75 89.8 1.00 Ta.23141.2.S1_at CD905119 Alpha-amylase inhibitor 0.19 - 6e+0 At4g35450 AKR2 (ANKYRIN REPEAT-CONTAINING PROTEIN 2) O.I. H.G. S.X.
0.74 89.4 1.00 Ta.23141.3.S1_x_at CD920680 Alpha-amylase inhibitor 0.19 /// Dimeric alpha-amylase inhibitor precursor - 7e+0 At4g35450 AKR2 (ANKYRIN REPEAT-CONTAINING PROTEIN 2) O.I. H.G. S.X.
0.72 88.3 1.00 Ta.24969.1.S1_s_at U86030.1 low-molecular-weight glutenin storage protein - 7e-1 At3g61240 DEAD/DEAH box helicase, putative (RH12) O.I. H.G. S.X.
0.72 88.3 1.00 Ta.22978.1.S1_x_at CD900366 - - 2e+1 At5g10390 histone H3 O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.92	98.5	1.00	Ta.5873.2.S1_at	CD902597	-	-	5e-1	At3g23830	GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4)	O.I.	H.G.	S.X.
0.95	99.1	1.00	Ta.19.1.S1_at	CD902219	wheat type V thionin	-	2e+0	At5g07600	oleosin / glycine-rich protein	O.I.	H.G.	S.X.
0.94	98.9	1.00	Ta.27778.6.S1_x_at	BJ232514	Alpha/beta-gliadin precursor	-	4e-2	At1g49010	myb family transcription factor	O.I.	H.G.	S.X.
0.94	98.9	1.00	Ta.23141.1.S1_at	BJ235767	puroindoline-a	-	2e+0	At4g29430	rps15ae (ribosomal protein S15A E)	O.I.	H.G.	S.X.
0.93	98.7	1.00	Ta.23142.11.S1_x_at	BJ242011	Low molecular weight glutenin subunit	-	5e-1	At4g31580	SRZ-22	O.I.	H.G.	S.X.
0.93	98.7	1.00	Ta.2448.1.S1_at	BJ237853	-	-	6e-1	At4g12050	DNA-binding protein-related	O.I.	H.G.	S.X.
0.93	98.7	1.00	Ta.131.1.S1_at	BE430809	low-molecular-weight glutenin storage protein	-	7e-1	At3g46613	RTFL4 (ROTUNDIFOLIA LIKE 4)	O.I.	H.G.	S.X.
0.93	98.7	1.00	Ta.23142.7.S1_x_at	BQ244524	-	-	9e-3	At5g61270	PIF7 (PHYTOCHROME-INTERACTING FACTOR7)	O.I.	H.G.	S.X.
0.92	98.5	1.00	Ta.24114.18.S1_x_at	BJ239750	-	-	1e+0	At5g10520	RBK1 (Rop Binding protein Kinases 1)	O.I.	H.G.	S.X.
0.90	94.8	1.00	Ta.24114.11.S1_x_at	BJ237788	Alpha/beta-gliadin precursor	-	3e+0	At5g53590	auxin-responsive family protein	O.I.	H.G.	S.X.
0.90	94.8	1.00	Ta.24114.1.S1_x_at	M10092.1	pre-alpha-/beta-gliadin A-II	-	3e+0	At5g53590	auxin-responsive family protein	O.I.	H.G.	S.X.
0.89	94.6	1.00	Ta.1257.2.A1_x_at	BJ242255	-	-	7e-1	At1g54830	NF-YC3 (NUCLEAR FACTOR Y, SUBUNIT C3)	O.I.	H.G.	S.X.
0.88	94.4	1.00	Ta.160.1.S1_x_at	U86028.1	pre-gamma-gliadin B-I	-	7e-1	At5g62575	unknown protein	O.I.	H.G.	S.X.
0.88	94.4	1.00	Ta.24114.14.S1_x_at	BJ241838	Gamma-gliadin /// Gamma-gliadin	-	3e+0	At3g20865	AGP40 (arabinogalactan-protein 40)	O.I.	H.G.	S.X.
0.87	94.2	1.00	Ta.14625.1.S1_x_at	BJ242520	lmw-gs	-	3e+0	At3g20865	AGP40 (arabinogalactan-protein 40)	O.I.	H.G.	S.X.
0.86	94.1	1.00	Ta.24963.1.S1_x_at	BJ241536	HMW glutenin	-	1e+0	At5g65790	MYB68 (MYB DOMAIN PROTEIN 68)	O.I.	H.G.	S.X.
0.86	94.1	1.00	TaAffx.128418.2.S1_x_at	BJ237448	gamma-gliadin /// gamma-gliadin /// gamma-gliadin	-	2e+0	At3g42150	unknown protein	O.I.	H.G.	S.X.
0.85	93.8	1.00	Ta.27780.1.S1_x_at	CD916747	beta amylase	-	2e-2	At4g15210	BAM5 (BETA-AMYLASE 5)	O.I.	H.G.	S.X.
0.84	93.6	1.00	Ta.27780.2.A1_a_at	BJ243011	-	-	6e+0	At5g15940	binding / catalytic/ oxidoreductase	O.I.	H.G.	S.X.
0.84	93.6	1.00	Ta.115.1.S1_at	CD453742	puroindoline-b	-	6e+0	At5g64950	mitochondrial transcription termination factor-related / mTERF-related	O.I.	H.G.	S.X.
0.84	93.6	1.00	Ta.24114.8.S1_x_at	BJ238810	Gamma-gliadin	-	7e-1	At3g13810	AtIDD11 (Arabidopsis thaliana Indeterminate(ID)-Domain 11)	O.I.	H.G.	S.X.
0.84	93.6	1.00	Ta.30782.9.S1_x_at	BJ237631	Gamma-gliadin	-	8e-1	At3g20865	AGP40 (arabinogalactan-protein 40)	O.I.	H.G.	S.X.
0.84	93.6	1.00	Ta.117.1.S1_at	CD914973	serpin	-	7e-1	At1g17650	GLYR2 (GLYOXYLATE REDUCTASE 2)	O.I.	H.G.	S.X.
0.84	93.6	1.00	Ta.24298.1.S1_x_at	BT008927.1	-	-	1e+0	At4g15950	NRPD4	O.I.	H.G.	S.X.
0.83	93.4	1.00	Ta.14625.2.S1_x_at	BQ806669	-	-	2e-1	At5g18550	nucleic acid binding / zinc ion binding	O.I.	H.G.	S.X.
0.83	93.4	1.00	TaAffx.52381.1.S1_at	CA708355	-	-	1e+0	At5g22530	unknown protein	O.I.	H.G.	S.X.
0.83	93.4	1.00	Ta.6175.1.S1_x_at	CD906599	-	-	6e+0	At5g66300	NAC105 (NAC DOMAIN CONTAINING PROTEIN 105)	O.I.	H.G.	S.X.
0.83	93.4	1.00	Ta.6699.1.S1_at	M11076.1	pre-alpha-/beta-gliadin A-III	-	2e-1	At1g49010	myb family transcription factor	O.I.	H.G.	S.X.
0.82	92.7	1.00	Ta.28632.1.S1_x_at	M16060.1	gamma-gliadin	-	3e-2	At1g18750	AGL65 (AGAMOUS-LIKE 65)	O.I.	H.G.	S.X.
0.81	92.4	1.00	Ta.1304.1.S1_at	CA717552	serine proteinase inhibitor-like allergen	-	6e+0	At2g47690	NADH-ubiquinone oxidoreductase-related	O.I.	H.G.	S.X.
0.81	92.4	1.00	Ta.6175.1.S1_at	CD906599	-	-	6e+0	At5g66300	NAC105 (NAC DOMAIN CONTAINING PROTEIN 105)	O.I.	H.G.	S.X.
0.81	92.4	1.00	Ta.27780.2.A1_x_at	BJ243011	-	-	6e+0	At5g15940	binding / catalytic/ oxidoreductase	O.I.	H.G.	S.X.
0.80	92.2	1.00	TaAffx.4219.1.S1_at	CA715111	-	-	4e+0	At3g27410	unknown protein	O.I.	H.G.	S.X.
0.79	91.3	1.00	Ta.1308.1.S1_at	CD918842	beta purothionin precursor	-	1e-1	At4g14550	IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14)	O.I.	H.G.	S.X.
0.79	91.3	1.00	Ta.27777.1.S2_at	BJ239761	-	-	8e-8	At3g13200	EMB2769 (EMBRYO DEFECTIVE 2769)	O.I.	H.G.	S.X.
0.78	91.1	1.00	Ta.27780.3.S1_x_at	CD897313	-	-	5e+0	At5g54740	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.
0.75	89.8	1.00	Ta.23141.2.S1_at	CD905119	Alpha-amylase inhibitor 0.19	-	6e+0	At4g35450	AKR2 (ANKYRIN REPEAT-CONTAINING PROTEIN 2)	O.I.	H.G.	S.X.
0.74	89.4	1.00	Ta.23141.3.S1_x_at	CD920680	Alpha-amylase inhibitor 0.19 /// Dimeric alpha-amylase inhibitor precursor	-	7e+0	At4g35450	AKR2 (ANKYRIN REPEAT-CONTAINING PROTEIN 2)	O.I.	H.G.	S.X.
0.72	88.3	1.00	Ta.24969.1.S1_s_at	U86030.1	low-molecular-weight glutenin storage protein	-	7e-1	At3g61240	DEAD/DEAH box helicase, putative (RH12)	O.I.	H.G.	S.X.
0.72	88.3	1.00	Ta.22978.1.S1_x_at	CD900366	-	-	2e+1	At5g10390	histone H3	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
56.1 99.9 GSM314288 tissue type: 22 DAP endosperm - rep2 GSE12508 Transcription patterns during wheat development
54.9 99.9 GSM314287 tissue type: 22 DAP endosperm - rep1 GSE12508 Transcription patterns during wheat development
54.8 99.9 GSM314289 tissue type: 22 DAP endosperm - rep3 GSE12508 Transcription patterns during wheat development
9.9 99.1 GSM315203 target strand labeled: Antisense - rep1 GSE12528 Wheat "Chinese Spring" natural antisense transcription survey
5.3 97.6 GSM314284 tissue type: 22 DAP embryo - rep1 GSE12508 Transcription patterns during wheat development
3.8 96.0 GSM314285 tissue type: 22 DAP embryo - rep2 GSE12508 Transcription patterns during wheat development
3.6 95.6 GSM314286 tissue type: 22 DAP embryo - rep3 GSE12508 Transcription patterns during wheat development
2.5 92.5 GSM111233 genotype H8 developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
2.3 91.5 GSM314253 tissue type: germinating seed, coleoptile - rep3 GSE12508 Transcription patterns during wheat development
2.1 90.3 GSM314280 tissue type: anthers, before anthesis - rep3 GSE12508 Transcription patterns during wheat development

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
56.1	99.9	GSM314288	tissue type: 22 DAP endosperm - rep2	GSE12508	Transcription patterns during wheat development
54.9	99.9	GSM314287	tissue type: 22 DAP endosperm - rep1	GSE12508	Transcription patterns during wheat development
54.8	99.9	GSM314289	tissue type: 22 DAP endosperm - rep3	GSE12508	Transcription patterns during wheat development
9.9	99.1	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
5.3	97.6	GSM314284	tissue type: 22 DAP embryo - rep1	GSE12508	Transcription patterns during wheat development
3.8	96.0	GSM314285	tissue type: 22 DAP embryo - rep2	GSE12508	Transcription patterns during wheat development
3.6	95.6	GSM314286	tissue type: 22 DAP embryo - rep3	GSE12508	Transcription patterns during wheat development
2.5	92.5	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.3	91.5	GSM314253	tissue type: germinating seed, coleoptile - rep3	GSE12508	Transcription patterns during wheat development
2.1	90.3	GSM314280	tissue type: anthers, before anthesis - rep3	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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Gene ID	Ta.5873.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g23830: GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4) (HF=5e-1)
Module size	40 genes
NF	0.85
%ile	98.6

Co-expression analysis

Gene ID Ta.5873.2.S1_at Gene name Homology with ArabidopsisSimilar to At3g23830: GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4) (HF=5e-1) Module size 40 genes NF 0.85 %ile 98.6

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaVitis_viniferaZea_mays

Gene ID Ta.5873.2.S1_at

Gene name
Homology with Arabidopsis Similar to At3g23830: GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4) (HF=5e-1)

Module size 40 genes

NF 0.85

%ile 98.6

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays