Co-expression analysis

Gene ID Ta.5873.1.S1_x_at
Gene name
Homology with ArabidopsisSimilar to At3g12500: ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) (HF=5e-1)
Module size 6 genes
NF 0.21
%ile 36.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.99Ta.5873.1.S1_x_atCD910379--5e-1At3g12500ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)O.I.H.G.S.X.
0.6786.31.00TaAffx.133698.1.A1_s_atBJ296326--1e+0At2g43570chitinase, putativeO.I.H.G.S.X.
0.5979.80.98Ta.23888.2.S1_x_atCD909855--6e-1At3g12500ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)O.I.H.G.S.X.
0.5072.41.00Ta.5839.1.S1_atBJ291864--9e-2At3g05675protein bindingO.I.H.G.S.X.
0.089.41.00Ta.5839.1.S1_x_atBJ291864--9e-2At3g05675protein bindingO.I.H.G.S.X.
0.067.61.00Ta.24114.10.S1_x_atBJ242919Pre-alpha-/beta-gliadin A-III-3e+0At1g43850SEU (seuss)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
60.699.9GSM314288tissue type: 22 DAP endosperm - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
60.399.9GSM314287tissue type: 22 DAP endosperm - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
57.699.9GSM314289tissue type: 22 DAP endosperm - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
8.999.0GSM314278tissue type: anthers, before anthesis - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
7.598.6GSM314280tissue type: anthers, before anthesis - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
5.797.9GSM315202target strand labeled: Sense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
5.697.8GSM139917Anther leptotene-pachytene rep2GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
4.997.3GSM139914Anther pre-meiosis rep2GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
4.797.1GSM139915Anther pre-meiosis rep3GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
4.697.0GSM139916Anther leptotene-pachytene rep1GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1620505_at, orthologous to the query gene, Ta.5873.1.S1_x_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.81620505_atAt3g12500chitinase class I-2e-3At3g12500ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)O.I.H.G.S.X.
0.8394.61617430_s_atAt3g12500chitinase class I-2e-3At3g12500ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)O.I.H.G.S.X.
0.7792.31611361_atAt3g12500hypothetical protein LOC100241171-5e-1At4g24540AGL24 (AGAMOUS-LIKE 24)O.I.H.G.S.X.
0.6787.91620438_atAt3g12500hypothetical protein LOC100243043-1e+0At1g49800unknown proteinO.I.H.G.S.X.
0.6384.31615789_atAt3g12500--1e-3At1g26250proline-rich extensin, putativeO.I.H.G.S.X.
0.4464.11610538_atAt3g12500hypothetical protein LOC100260291-3e-1At1g60740peroxiredoxin type 2, putativeO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Zea_mays



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